SMTL ID : 1xe5.1

Structure of plasmepsin II in complex of an pepstatin analogue

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x 5FE: 5,5,5-TRIFLUORO-3-HYDROXY-4-[2-(5,5,5-TRIFLUORO-3-HYDROXY-4-{3-METHYL-2-[3-METHYL-2-(3-METHYL-BUTYRYLAMINO)-BUTYRYLAMINO]-BUTYRYLAMINO}-PENTANOYLAMINO)-PROPIONYLAMINO]-PENTANOIC ACID METHYL ESTER(Non-covalent)

5FE.1: 19 residues within 4Å: Chain A: D.34, G.36, S.37, N.76, Y.77, V.78, S.79, T.114, I.123, L.131, Y.192, D.214, G.216, T.217, S.218, A.219, I.290 Chain B: F.241, L.242 20 PLIP interactions: 19 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.78, A:T.114, A:T.217, A:A.219, A:I.290, B:L.242 Hydrogen bonds: A:G.36, A:N.76, A:V.78, A:S.79, A:S.79, A:S.79, A:Y.192, A:D.214, A:T.217, A:T.217, A:S.218, A:S.218, A:S.218 Water bridges: A:N.76 5FE.2: 22 residues within 4Å: Chain A: F.241, L.242 Chain B: D.34, G.36, S.37, M.75, N.76, Y.77, V.78, S.79, F.111, I.123, L.131, Y.192, D.214, G.216, T.217, S.218, A.219, F.244, I.290, I.300 20 PLIP interactions: 18 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:V.78, B:T.217, B:A.219, B:F.244, B:I.290, B:I.300, A:F.241, A:F.241 Hydrogen bonds: B:G.36, B:N.76, B:V.78, B:S.79, B:S.79, B:S.79, B:Y.192, B:D.214, B:G.216, B:S.218, B:S.218 Water bridges: B:N.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prade, L., Structure of plasmepsin II in complex of an pepstatin analogue. To be published

Release Date

2005-08-23

Peptides

Plasmepsin 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Plasmepsin 2

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