- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.10 Å
- Oligo State
- hetero-1-1-2-mer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x DBV: 15,16-DIHYDROBILIVERDIN(Covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x PEB: PHYCOERYTHROBILIN(Covalent)
PEB.5: 26 residues within 4Å:- Chain A: F.64, E.65, K.66, D.69, G.70, P.71, F.72, T.73, S.74
- Chain C: C.50, D.54, S.57, G.58, C.61, E.62, R.129, I.133, A.136, C.137, A.140, F.141, T.145, A.146, S.147, Q.148
- Ligands: PEB.9
26 PLIP interactions:9 interactions with chain A, 17 interactions with chain C- Hydrophobic interactions: A:K.66, A:D.69, A:F.72, A:T.73, C:D.54, C:A.136, C:A.140, C:F.141, C:F.141, C:A.146
- Hydrogen bonds: A:D.69, A:P.71, A:T.73, A:S.74, C:D.54, C:T.145, C:S.147, C:Q.148
- Water bridges: A:D.69, C:R.129, C:R.129, C:R.129, C:A.136, C:S.147, C:S.147
- Salt bridges: C:R.129
PEB.6: 21 residues within 4Å:- Chain A: I.13, D.15, R.17, Q.34, M.38, M.39
- Chain C: L.24, K.28, N.35, K.36, L.38, D.39, S.40, V.142, N.143, N.144, T.153, P.154, Q.155, G.156, C.158
25 PLIP interactions:17 interactions with chain C, 8 interactions with chain A- Hydrophobic interactions: C:L.24, C:N.35, C:K.36, C:L.38, C:D.39, C:N.144, C:T.153, C:P.154, A:D.15, A:M.38
- Hydrogen bonds: C:K.28, C:N.35, C:D.39, C:D.39, C:P.154, C:G.156, A:Q.34
- Water bridges: C:N.35, C:N.35, C:K.36, A:R.17, A:R.17, A:R.17, A:R.17
- Salt bridges: A:R.17
PEB.7: 26 residues within 4Å:- Chain A: M.2, K.4, S.5, A.6, K.7
- Chain C: M.59, L.66, N.72, C.73, R.77, R.78, A.81, C.82, R.84, D.85, I.88, Y.92, R.108, L.113, T.116, Y.117, L.120, V.122, P.123, S.126, N.127
21 PLIP interactions:20 interactions with chain C, 1 interactions with chain A- Hydrophobic interactions: C:R.78, C:A.81, C:I.88, C:I.88, C:Y.92, C:T.116, C:L.120, C:N.127
- Hydrogen bonds: C:R.84, C:D.85, A:A.6
- Water bridges: C:R.77, C:R.77, C:R.78, C:R.84, C:R.84, C:R.84
- Salt bridges: C:R.77, C:R.78, C:R.84
- pi-Cation interactions: C:R.84
PEB.9: 20 residues within 4Å:- Chain A: G.67, I.68
- Chain B: K.64
- Chain C: C.50, Q.148
- Chain D: N.47, C.50, D.54, S.57, G.58, C.61, E.62, R.129, I.133, A.136, C.137, A.140, F.141
- Ligands: CL.4, PEB.5
17 PLIP interactions:3 interactions with chain C, 2 interactions with chain A, 10 interactions with chain D, 2 interactions with chain B- Hydrogen bonds: C:Q.148, A:I.68, D:D.54, D:D.54
- Water bridges: C:S.147, C:S.147, A:D.69, D:R.129, D:R.129
- Hydrophobic interactions: D:I.133, D:A.136, D:A.140, D:F.141, D:F.141, B:K.64, B:K.64
- Salt bridges: D:R.129
PEB.10: 20 residues within 4Å:- Chain B: I.13, D.15, R.17, M.38, M.39
- Chain D: L.24, K.28, N.35, K.36, L.38, D.39, S.40, V.142, N.144, L.151, T.153, P.154, Q.155, G.156, C.158
22 PLIP interactions:8 interactions with chain B, 14 interactions with chain D- Hydrophobic interactions: B:D.15, B:M.38, D:L.24, D:N.35, D:L.38, D:L.38, D:D.39
- Water bridges: B:R.17, B:R.17, B:R.17, B:R.17, B:R.17, D:K.36
- Salt bridges: B:R.17, D:K.36
- Hydrogen bonds: D:K.28, D:N.35, D:D.39, D:D.39, D:T.153, D:P.154, D:G.156
PEB.11: 26 residues within 4Å:- Chain B: M.2, K.4, S.5, A.6, K.7
- Chain D: M.59, L.66, N.72, C.73, R.77, R.78, A.81, C.82, R.84, D.85, I.88, R.108, L.113, T.116, Y.117, L.120, V.122, P.123, S.126, N.127, A.130
18 PLIP interactions:3 interactions with chain B, 15 interactions with chain D- Hydrophobic interactions: B:K.4, D:R.78, D:A.81, D:I.88, D:I.88, D:T.116, D:L.120, D:N.127, D:A.130
- Hydrogen bonds: B:A.6, D:R.84, D:D.85
- Water bridges: B:K.4, D:R.84, D:R.84
- Salt bridges: D:R.77, D:R.84
- pi-Cation interactions: D:R.84
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Doust, A.B. et al., Developing a structure-function model for the cryptophyte phycoerythrin 545 using ultrahigh resolution crystallography and ultrafast laser spectroscopy. J.Mol.Biol. (2004)
- Release Date
- 2004-11-30
- Peptides
- Phycoerythrin alpha-3 chain: A
Phycoerythrin alpha-2 chain: B
B-phycoerythrin beta chain: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.10 Å
- Oligo State
- hetero-1-1-2-mer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x DBV: 15,16-DIHYDROBILIVERDIN(Covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x PEB: PHYCOERYTHROBILIN(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Doust, A.B. et al., Developing a structure-function model for the cryptophyte phycoerythrin 545 using ultrahigh resolution crystallography and ultrafast laser spectroscopy. J.Mol.Biol. (2004)
- Release Date
- 2004-11-30
- Peptides
- Phycoerythrin alpha-3 chain: A
Phycoerythrin alpha-2 chain: B
B-phycoerythrin beta chain: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D