- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x PYR: PYRUVIC ACID(Non-covalent)
PYR.2: 11 residues within 4Å:- Chain A: Y.42, S.44, G.45, G.46, D.57, D.84, R.157, N.209, P.235
- Ligands: MG.1, SIN.3
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:P.235
- Hydrogen bonds: A:Y.42, A:G.45, A:G.46, A:R.157
PYR.5: 11 residues within 4Å:- Chain B: Y.42, S.44, G.45, G.46, D.84, H.112, R.157, N.209, P.235
- Ligands: MG.4, SIN.6
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:P.235
- Hydrogen bonds: B:Y.42, B:G.45, B:G.46, B:R.157
- Water bridges: B:K.120
PYR.8: 10 residues within 4Å:- Chain C: Y.42, S.44, G.45, G.46, D.84, H.112, R.157, N.209, P.235
- Ligands: MG.7
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:G.45, C:G.46
- Water bridges: C:S.44, C:S.44, C:R.157
PYR.10: 12 residues within 4Å:- Chain D: Y.42, S.44, G.45, G.46, D.57, D.84, H.112, R.157, N.209, P.235
- Ligands: MG.9, SIN.11
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:G.45, D:G.46, D:R.157
- Water bridges: D:K.120
- 3 x SIN: SUCCINIC ACID(Non-covalent)
SIN.3: 11 residues within 4Å:- Chain A: D.57, S.122, G.123, H.124, R.157, E.187, N.209, T.211, R.240
- Chain B: R.269
- Ligands: PYR.2
12 PLIP interactions:1 interactions with chain B, 11 interactions with chain A- Salt bridges: B:R.269, A:H.124, A:R.157, A:R.240
- Hydrogen bonds: A:S.122, A:G.123, A:E.187, A:N.209
- Water bridges: A:D.57, A:K.120, A:R.240, A:R.240
SIN.6: 11 residues within 4Å:- Chain A: R.269
- Chain B: S.122, G.123, H.124, R.157, E.187, N.209, T.211, L.236, R.240
- Ligands: PYR.5
13 PLIP interactions:12 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:S.122, B:G.123, B:H.124, B:E.187, B:N.209
- Water bridges: B:D.57, B:R.157, B:R.240, B:R.240
- Salt bridges: B:H.124, B:R.157, B:R.240, A:R.269
SIN.11: 10 residues within 4Å:- Chain C: R.269
- Chain D: S.122, G.123, H.124, R.157, E.187, N.209, T.211, R.240
- Ligands: PYR.10
11 PLIP interactions:1 interactions with chain C, 10 interactions with chain D- Salt bridges: C:R.269, D:R.157, D:R.240
- Hydrogen bonds: D:S.122, D:G.123, D:N.209, D:T.211
- Water bridges: D:D.57, D:R.157, D:R.240, D:R.240
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, S. et al., Crystal Structures of 2-Methylisocitrate Lyase in Complex with Product and with Isocitrate Inhibitor Provide Insight into Lyase Substrate Specificity, Catalysis and Evolution. Biochemistry (2005)
- Release Date
- 2005-03-01
- Peptides
- Probable methylisocitrate lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x PYR: PYRUVIC ACID(Non-covalent)
- 3 x SIN: SUCCINIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, S. et al., Crystal Structures of 2-Methylisocitrate Lyase in Complex with Product and with Isocitrate Inhibitor Provide Insight into Lyase Substrate Specificity, Catalysis and Evolution. Biochemistry (2005)
- Release Date
- 2005-03-01
- Peptides
- Probable methylisocitrate lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D