- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x DG- DC- DC- DG- DG- DT- DC: 5'-D(*GP*CP*CP*GP*GP*TP*C)-3'(Non-covalent)
- 2 x DG- DA- DC- DC- DG- DG: 5'-D(P*GP*AP*CP*CP*GP*G)-3'(Non-covalent)
DG-DA-DC-DC-DG-DG.2: 39 residues within 4Å:- Chain A: H.72, E.73, Y.76, L.85, S.89, G.91, K.92, K.107, Q.108
- Chain B: G.29, H.30, E.34, E.37, D.113, K.128, T.129, R.130, N.131, K.134, S.135, A.136, Q.137, A.138, P.139, N.140, Q.208
- Ligands: DG-DC-DC-DG-DG-DT-DC.1, DG-DC-DC-DG-DG-DT-DC.3, DG-DC-DC-DG-DG-DT-DC.3, DG-DC-DC-DG-DG-DT-DC.3, DG-DC-DC-DG-DG-DT-DC.3, DG-DC-DC-DG-DG-DT-DC.3, DG-DC-DC-DG-DG-DT-DC.3, DG-DA-DC-DC-DG-DG.4, MN.5, MN.6, MN.12, MN.13, MN.15
Protein-ligand interaction information (PLIP) not availableDG-DA-DC-DC-DG-DG.4: 39 residues within 4Å:- Chain A: H.30, E.37, D.113, K.128, T.129, R.130, N.131, K.134, S.135, A.136, Q.137, A.138, P.139, N.140, Q.208
- Chain B: G.29, H.30, H.72, E.73, Y.76, S.89, R.90, G.91, K.92, K.107, Q.108
- Ligands: DG-DC-DC-DG-DG-DT-DC.1, DG-DC-DC-DG-DG-DT-DC.1, DG-DC-DC-DG-DG-DT-DC.1, DG-DC-DC-DG-DG-DT-DC.1, DG-DC-DC-DG-DG-DT-DC.1, DG-DC-DC-DG-DG-DT-DC.1, DG-DA-DC-DC-DG-DG.2, DG-DC-DC-DG-DG-DT-DC.3, MN.8, MN.9, MN.10, MN.11, MN.14
Protein-ligand interaction information (PLIP) not available- 11 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)
MN.5: 4 residues within 4Å:- Chain B: D.113, D.126
- Ligands: DG-DC-DC-DG-DG-DT-DC.1, DG-DA-DC-DC-DG-DG.2
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:D.113, H2O.1, H2O.13, H2O.13, H2O.20
MN.6: 3 residues within 4Å:- Chain B: E.34
- Ligands: DG-DA-DC-DC-DG-DG.2, MN.15
No protein-ligand interaction detected (PLIP)MN.7: 2 residues within 4Å:- Ligands: DG-DC-DC-DG-DG-DT-DC.3, DG-DC-DC-DG-DG-DT-DC.3
No protein-ligand interaction detected (PLIP)MN.8: 4 residues within 4Å:- Chain A: D.113, D.126
- Ligands: DG-DC-DC-DG-DG-DT-DC.3, DG-DA-DC-DC-DG-DG.4
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.113, H2O.5, H2O.8, H2O.8
MN.9: 4 residues within 4Å:- Chain A: E.37, E.106, D.113
- Ligands: DG-DA-DC-DC-DG-DG.4
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.37, H2O.4
MN.10: 2 residues within 4Å:- Chain B: G.29
- Ligands: DG-DA-DC-DC-DG-DG.4
No protein-ligand interaction detected (PLIP)MN.11: 5 residues within 4Å:- Chain A: E.37, D.113, D.126, V.127
- Ligands: DG-DA-DC-DC-DG-DG.4
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.37, A:D.113, A:V.127, H2O.4, H2O.8
MN.12: 3 residues within 4Å:- Chain A: H.72, E.73
- Ligands: DG-DA-DC-DC-DG-DG.2
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.72, A:E.73, H2O.2, H2O.2
MN.13: 5 residues within 4Å:- Chain B: E.37, D.113, D.126, V.127
- Ligands: DG-DA-DC-DC-DG-DG.2
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.37, B:D.113, B:V.127, H2O.20
MN.14: 4 residues within 4Å:- Chain B: H.72, E.73, K.92
- Ligands: DG-DA-DC-DC-DG-DG.4
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:H.72, B:E.73, H2O.19, H2O.24
MN.15: 4 residues within 4Å:- Chain B: H.30, Q.108
- Ligands: DG-DA-DC-DC-DG-DG.2, MN.6
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.30, H2O.23
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Etzkorn, C. et al., Mechanistic Insights from the Structures of HincII Bound to Cognate DNA Cleaved from Addition of Mg(2+) and Mn(2+). J.Mol.Biol. (2004)
- Release Date
- 2004-09-28
- Peptides
- Type II restriction enzyme HincII: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x DG- DC- DC- DG- DG- DT- DC: 5'-D(*GP*CP*CP*GP*GP*TP*C)-3'(Non-covalent)
- 2 x DG- DA- DC- DC- DG- DG: 5'-D(P*GP*AP*CP*CP*GP*G)-3'(Non-covalent)
- 11 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Etzkorn, C. et al., Mechanistic Insights from the Structures of HincII Bound to Cognate DNA Cleaved from Addition of Mg(2+) and Mn(2+). J.Mol.Biol. (2004)
- Release Date
- 2004-09-28
- Peptides
- Type II restriction enzyme HincII: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B