- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NAP.3: 19 residues within 4Å:- Chain A: K.107, P.109, L.110, T.112, N.122, G.325, E.340, P.341, V.342, H.343, G.344, T.345, A.346, P.347, Y.349, I.355, N.356, D.397, R.400
14 PLIP interactions:14 interactions with chain A- Hydrogen bonds: A:K.107, A:L.110, A:T.112, A:N.122, A:V.342, A:G.344, A:G.344, A:T.345, A:A.346, A:Y.349, A:Y.349, A:N.356, A:N.356
- Salt bridges: A:R.400
NAP.5: 25 residues within 4Å:- Chain A: N.235, I.285, N.288, Q.291, Q.292, R.296
- Chain B: P.109, L.110, T.112, N.122, R.126, I.324, G.325, E.340, V.342, H.343, G.344, T.345, A.346, K.348, Y.349, I.355, N.356, D.397
- Ligands: ICT.6
19 PLIP interactions:12 interactions with chain B, 7 interactions with chain A- Hydrogen bonds: B:T.112, B:R.126, B:E.340, B:E.340, B:G.344, B:G.344, B:T.345, B:A.346, B:Y.349, B:N.356, B:N.356, A:N.235, A:Q.292, A:Q.292
- Salt bridges: B:K.348, A:R.296
- Water bridges: A:I.285, A:N.288, A:N.288
- 2 x ICT: ISOCITRIC ACID(Non-covalent)
ICT.4: 9 residues within 4Å:- Chain A: R.136, R.159, Y.166, D.311
- Chain B: K.233, N.235, I.236, D.287
- Ligands: CA.2
13 PLIP interactions:5 interactions with chain B, 8 interactions with chain A- Hydrophobic interactions: B:I.236
- Hydrogen bonds: B:K.233, B:N.235
- Salt bridges: B:K.233, B:K.233, A:R.136, A:R.159, A:R.159
- Water bridges: A:R.136, A:R.136, A:R.136, A:D.315, A:D.315
ICT.6: 16 residues within 4Å:- Chain A: K.233, N.235, I.236, D.287
- Chain B: T.112, S.120, N.122, V.123, R.126, R.136, R.159, Y.166, D.311, V.342
- Ligands: CA.1, NAP.5
15 PLIP interactions:9 interactions with chain B, 6 interactions with chain A- Hydrogen bonds: B:S.120, B:N.122, B:Y.166, A:K.233, A:N.235, A:D.287
- Water bridges: B:D.315, A:D.287, A:D.287
- Salt bridges: B:R.126, B:R.126, B:R.136, B:R.159, B:R.159, A:K.233
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Karlstrom, M. et al., Isocitrate dehydrogenase from the hyperthermophile Aeropyrum pernix: X-ray structure analysis of a ternary enzyme-substrate complex and thermal stability. J.Mol.Biol. (2005)
- Release Date
- 2005-10-04
- Peptides
- isocitrate dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 2 x ICT: ISOCITRIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Karlstrom, M. et al., Isocitrate dehydrogenase from the hyperthermophile Aeropyrum pernix: X-ray structure analysis of a ternary enzyme-substrate complex and thermal stability. J.Mol.Biol. (2005)
- Release Date
- 2005-10-04
- Peptides
- isocitrate dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B