SMTL ID : 1xkq.1

Crystal Structure of Short-Chain Dehydrogenase/Reductase of unknown Function from Caenorhabditis Elegans with Cofactor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 30 residues within 4Å: Chain A: G.13, S.14, S.15, N.16, G.17, I.18, G.37, R.38, S.39, R.42, A.65, D.66, V.67, T.68, N.93, A.94, G.95, L.120, V.146, S.147, S.148, Y.162, K.166, P.192, G.193, M.194, V.195, T.197, G.198, F.199 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:P.192, A:V.195 Hydrogen bonds: A:S.15, A:S.15, A:N.16, A:N.16, A:I.18, A:R.38, A:R.38, A:R.38, A:S.39, A:D.66, A:D.66, A:V.67, A:N.93, A:G.95, A:K.166, A:V.195, A:V.195, A:T.197, A:T.197, A:G.198, A:G.198 Water bridges: A:G.19, A:R.38, A:R.38, A:R.42, A:N.93 Salt bridges: A:R.42 NDP.2: 30 residues within 4Å: Chain B: G.13, S.14, S.15, N.16, G.17, I.18, G.37, R.38, S.39, R.42, A.65, D.66, V.67, T.68, N.93, A.94, G.95, L.120, V.146, S.147, S.148, Y.162, K.166, P.192, G.193, M.194, V.195, T.197, G.198, F.199 33 PLIP interactions: 33 interactions with chain B Hydrophobic interactions: B:P.192, B:V.195 Hydrogen bonds: B:S.15, B:S.15, B:N.16, B:N.16, B:I.18, B:R.38, B:R.38, B:S.39, B:D.66, B:V.67, B:N.93, B:G.95, B:Y.162, B:K.166, B:V.195, B:V.195, B:T.197, B:T.197, B:G.198, B:G.198, B:F.199 Water bridges: B:N.16, B:N.16, B:G.19, B:R.38, B:R.42, B:R.42, B:R.42, B:R.42, B:N.93 Salt bridges: B:R.42 NDP.3: 30 residues within 4Å: Chain C: G.13, S.14, S.15, N.16, G.17, I.18, G.37, R.38, S.39, R.42, A.65, D.66, V.67, T.68, N.93, A.94, G.95, L.120, V.146, S.147, S.148, Y.162, K.166, P.192, G.193, M.194, V.195, T.197, G.198, F.199 32 PLIP interactions: 32 interactions with chain C Hydrophobic interactions: C:P.192, C:V.195 Hydrogen bonds: C:S.15, C:S.15, C:N.16, C:N.16, C:I.18, C:R.38, C:R.38, C:S.39, C:D.66, C:V.67, C:N.93, C:G.95, C:Y.162, C:K.166, C:V.195, C:V.195, C:T.197, C:T.197, C:G.198, C:G.198, C:F.199 Water bridges: C:N.16, C:N.16, C:G.19, C:R.38, C:R.38, C:R.42, C:N.93, C:V.146 Salt bridges: C:R.42 NDP.4: 30 residues within 4Å: Chain D: G.13, S.14, S.15, N.16, G.17, I.18, G.37, R.38, S.39, R.42, A.65, D.66, V.67, T.68, N.93, A.94, G.95, L.120, V.146, S.147, S.148, Y.162, K.166, P.192, G.193, M.194, V.195, T.197, G.198, F.199 32 PLIP interactions: 32 interactions with chain D Hydrophobic interactions: D:P.192 Hydrogen bonds: D:S.15, D:S.15, D:N.16, D:N.16, D:I.18, D:R.38, D:R.38, D:S.39, D:D.66, D:D.66, D:V.67, D:N.93, D:G.95, D:K.166, D:V.195, D:V.195, D:T.197, D:G.198, D:G.198, D:F.199 Water bridges: D:N.16, D:N.16, D:G.19, D:R.38, D:R.38, D:R.38, D:R.42, D:N.93 Salt bridges: D:R.38, D:R.42 pi-Cation interactions: D:R.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schormann, N. et al., Crystal Structure of Short-Chain Dehydrogenase/Reductase of unknown Function from Caenorhabditis Elegans with Cofactor. To be Published

Release Date

2004-10-12

Peptides

short-chain reductase family member (5D234): ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

short-chain reductase family member (5D234)