SMTL ID : 1xku.1

Crystal structure of the dimeric protein core of decorin, the archetypal small leucine-rich repeat proteoglycan

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.155, P.156, K.158, N.182 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.158, A:N.182 NAG.2: 1 residues within 4Å: Chain A: N.233 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.233 NAG.3: 1 residues within 4Å: Chain A: N.274 No protein-ligand interaction detected (PLIP) NAG.5: 4 residues within 4Å: Chain B: N.155, P.156, K.158, N.182 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.158, B:N.182 NAG.6: 1 residues within 4Å: Chain B: N.233 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.233 NAG.7: 1 residues within 4Å: Chain B: N.274 No protein-ligand interaction detected (PLIP)

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) TRS.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scott, P.G. et al., Crystal structure of the dimeric protein core of decorin, the archetypal small leucine-rich repeat proteoglycan. Proc.Natl.Acad.Sci.Usa (2004)

Release Date

2004-11-02

Peptides

Decorin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Decorin