SMTL ID : 1xny.1

Biotin and propionyl-CoA bound to Acyl-CoA Carboxylase Beta Subunit from S. coelicolor (PccB)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-hexamer

Ligands

6 x 1VU: propionyl Coenzyme A(Non-covalent)

1VU.1: 21 residues within 4Å: Chain A: N.80, F.109, G.110, A.112, G.142, G.143, A.144, R.145, I.146, Q.147, L.153, Y.156, G.182, G.183 Chain B: G.418, G.419, V.444, I.453, R.456, R.457 Ligands: BTN.4 17 PLIP interactions: 11 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:A.144, A:L.153, A:Y.156, B:I.453, B:I.453 Hydrogen bonds: A:N.80, A:A.144, A:A.144, A:A.144, A:I.146, A:Q.147, A:G.183 Water bridges: A:G.76 Salt bridges: B:R.456, B:R.456, B:R.457, B:R.457 1VU.3: 20 residues within 4Å: Chain A: G.418, G.419, V.444, I.453, R.456 Chain B: N.80, F.109, A.112, G.142, G.143, A.144, R.145, I.146, Q.147, L.153, Y.156, A.181, G.182, G.183 Ligands: BTN.2 15 PLIP interactions: 12 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:L.153, B:Y.156, A:I.453 Hydrogen bonds: B:N.80, B:A.144, B:A.144, B:A.144, B:I.146, B:Q.147, B:G.183 Water bridges: B:G.142, B:G.142, B:Q.147 Salt bridges: A:R.456, A:R.456 1VU.5: 21 residues within 4Å: Chain C: N.80, F.109, G.110, A.112, G.142, G.143, A.144, R.145, I.146, Q.147, L.153, Y.156, G.182, G.183 Chain D: G.418, G.419, V.444, I.453, R.456, R.457 Ligands: BTN.8 17 PLIP interactions: 11 interactions with chain C, 6 interactions with chain D Hydrophobic interactions: C:A.144, C:L.153, C:Y.156, D:I.453, D:I.453 Hydrogen bonds: C:N.80, C:A.144, C:A.144, C:A.144, C:I.146, C:Q.147, C:G.183 Water bridges: C:G.76 Salt bridges: D:R.456, D:R.456, D:R.457, D:R.457 1VU.7: 20 residues within 4Å: Chain C: G.418, G.419, V.444, I.453, R.456 Chain D: N.80, F.109, A.112, G.142, G.143, A.144, R.145, I.146, Q.147, L.153, Y.156, A.181, G.182, G.183 Ligands: BTN.6 15 PLIP interactions: 12 interactions with chain D, 3 interactions with chain C Hydrophobic interactions: D:L.153, D:Y.156, C:I.453 Hydrogen bonds: D:N.80, D:A.144, D:A.144, D:A.144, D:I.146, D:Q.147, D:G.183 Water bridges: D:G.142, D:G.142, D:Q.147 Salt bridges: C:R.456, C:R.456 1VU.9: 21 residues within 4Å: Chain E: N.80, F.109, G.110, A.112, G.142, G.143, A.144, R.145, I.146, Q.147, L.153, Y.156, G.182, G.183 Chain F: G.418, G.419, V.444, I.453, R.456, R.457 Ligands: BTN.12 17 PLIP interactions: 11 interactions with chain E, 6 interactions with chain F Hydrophobic interactions: E:A.144, E:L.153, E:Y.156, F:I.453, F:I.453 Hydrogen bonds: E:N.80, E:A.144, E:A.144, E:A.144, E:I.146, E:Q.147, E:G.183 Water bridges: E:G.76 Salt bridges: F:R.456, F:R.456, F:R.457, F:R.457 1VU.11: 20 residues within 4Å: Chain E: G.418, G.419, V.444, I.453, R.456 Chain F: N.80, F.109, A.112, G.142, G.143, A.144, R.145, I.146, Q.147, L.153, Y.156, A.181, G.182, G.183 Ligands: BTN.10 15 PLIP interactions: 12 interactions with chain F, 3 interactions with chain E Hydrophobic interactions: F:L.153, F:Y.156, E:I.453 Hydrogen bonds: F:N.80, F:A.144, F:A.144, F:A.144, F:I.146, F:Q.147, F:G.183 Water bridges: F:G.142, F:G.142, F:Q.147 Salt bridges: E:R.456, E:R.456

6 x BTN: BIOTIN(Non-covalent)

BTN.2: 13 residues within 4Å: Chain A: C.347, P.377, G.378, F.379, P.381, F.417, G.418, G.419, A.420 Chain B: G.182, I.205, T.206 Ligands: 1VU.3 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:P.381, B:T.206 Hydrogen bonds: A:F.379, A:F.379, A:G.419, A:A.420 BTN.4: 14 residues within 4Å: Chain A: G.182, I.205, T.206, V.210 Chain B: C.347, P.377, G.378, F.379, P.381, F.417, G.418, G.419, A.420 Ligands: 1VU.1 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:P.381, A:T.206, A:V.210 Hydrogen bonds: B:F.379, B:G.419, B:A.420 BTN.6: 13 residues within 4Å: Chain C: C.347, P.377, G.378, F.379, P.381, F.417, G.418, G.419, A.420 Chain D: G.182, I.205, T.206 Ligands: 1VU.7 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:P.381, D:T.206 Hydrogen bonds: C:F.379, C:F.379, C:G.419, C:A.420 BTN.8: 14 residues within 4Å: Chain C: G.182, I.205, T.206, V.210 Chain D: C.347, P.377, G.378, F.379, P.381, F.417, G.418, G.419, A.420 Ligands: 1VU.5 6 PLIP interactions: 2 interactions with chain C, 4 interactions with chain D Hydrophobic interactions: C:T.206, C:V.210, D:P.381 Hydrogen bonds: D:F.379, D:G.419, D:A.420 BTN.10: 13 residues within 4Å: Chain E: C.347, P.377, G.378, F.379, P.381, F.417, G.418, G.419, A.420 Chain F: G.182, I.205, T.206 Ligands: 1VU.11 6 PLIP interactions: 5 interactions with chain E, 1 interactions with chain F Hydrophobic interactions: E:P.381, F:T.206 Hydrogen bonds: E:F.379, E:F.379, E:G.419, E:A.420 BTN.12: 14 residues within 4Å: Chain E: G.182, I.205, T.206, V.210 Chain F: C.347, P.377, G.378, F.379, P.381, F.417, G.418, G.419, A.420 Ligands: 1VU.9 6 PLIP interactions: 2 interactions with chain E, 4 interactions with chain F Hydrophobic interactions: E:T.206, E:V.210, F:P.381 Hydrogen bonds: F:F.379, F:G.419, F:A.420

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Diacovich, L. et al., Crystal Structure of the beta-Subunit of Acyl-CoA Carboxylase: Structure-Based Engineering of Substrate Specificity. Biochemistry (2004)

Release Date

2004-11-09

Peptides

propionyl-CoA carboxylase complex B subunit: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

propionyl-CoA carboxylase complex B subunit

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