SMTL ID : 1xvi.1

Crystal Structure of YedP, phosphatase-like domain protein from Escherichia coli K12

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

homo-dimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: S.50, G.177, A.178, R.179, F.180, H.182 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.50, A:A.178, A:R.179, A:F.180 Salt bridges: A:H.182 SO4.2: 5 residues within 4Å: Chain A: I.78, I.93, Q.192, A.193, W.196 1 PLIP interactions: 1 interactions with chain A Water bridges: A:W.196 SO4.6: 6 residues within 4Å: Chain B: S.50, G.177, A.178, R.179, F.180, H.182 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.50, B:G.177, B:A.178, B:R.179, B:F.180 Salt bridges: B:R.179, B:H.182

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.3: 4 residues within 4Å: Chain A: L.38, L.214, Y.229 Ligands: PG4.4 No protein-ligand interaction detected (PLIP)

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.4: 4 residues within 4Å: Chain A: A.31, W.34 Ligands: 1PE.3, PGE.5 No protein-ligand interaction detected (PLIP)

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.5: 3 residues within 4Å: Chain A: L.20, L.214 Ligands: PG4.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of YedP, phosphatase-like domain protein from Escherichia coli K12. To be Published

Release Date

2004-12-14

Peptides

Putative mannosyl-3-phosphoglycerate phosphatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative mannosyl-3-phosphoglycerate phosphatase