SMTL ID : 1yaz.1

AZIDE-BOUND YEAST CU(II)/ZN SUPEROXIDE DISMUTASE ROOM TEMPERATURE (298K) STRUCTURE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 5 residues within 4Å: Chain A: H.46, H.48, H.63, H.120 Ligands: AZI.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.46, A:H.48, A:H.63, A:H.120 CU.4: 5 residues within 4Å: Chain B: H.46, H.48, H.63, H.120 Ligands: AZI.6 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.46, B:H.48, B:H.63, B:H.120

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.63, H.71, H.80, D.83, K.136 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.63, A:H.71, A:H.80, A:D.83, A:D.83 ZN.5: 5 residues within 4Å: Chain B: H.63, H.71, H.80, D.83, K.136 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.63, B:H.71, B:H.80, B:D.83, B:D.83

2 x AZI: AZIDE ION(Non-covalent)

AZI.3: 7 residues within 4Å: Chain A: H.48, P.62, H.63, H.120, T.137, R.143 Ligands: CU.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.63, A:R.143 Water bridges: A:G.61 AZI.6: 7 residues within 4Å: Chain B: H.48, P.62, H.63, H.120, T.137, R.143 Ligands: CU.4 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.63, B:R.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hart, P.J. et al., A structure-based mechanism for copper-zinc superoxide dismutase. Biochemistry (1999)

Release Date

2000-01-12

Peptides

PROTEIN (CU/ZN SUPEROXIDE DISMUTASE): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PROTEIN (CU/ZN SUPEROXIDE DISMUTASE)

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