SMTL ID : 1yd0.1

Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Thermotoga maritima bound to its catalytic divalent cation: manganese

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 1 residues within 4Å: Chain A: E.76 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:E.76, H2O.1, H2O.1, H2O.1, H2O.5, H2O.5 MN.2: 2 residues within 4Å: Chain A: N.68, R.70 No protein-ligand interaction detected (PLIP) MN.3: 1 residues within 4Å: Chain A: E.49 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.49, H2O.4, H2O.5 MN.4: 2 residues within 4Å: Chain A: K.22, E.60 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:E.60, H2O.3, H2O.4, H2O.4, H2O.4, H2O.5

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain A: I.20, K.22, P.27, E.62, Y.83 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.22, A:Y.83 Water bridges: A:E.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Truglio, J.J. et al., Structural insights into the first incision reaction during nucleotide excision repair. Embo J. (2005)

Release Date

2005-03-01

Peptides

UvrABC system protein C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UvrABC system protein C

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