SMTL ID : 1yd6.2 (1 other biounit)

Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Bacillus caldotenax

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-octamer

Ligands

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: N.80 Chain B: N.80 Chain C: N.80 Chain D: N.80 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain C: L.81, K.84, H.85 Chain D: L.75 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain C: E.14, S.36, K.38, E.39 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain E: N.80 Chain F: N.80 Chain G: N.80 Chain H: N.80 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain G: L.81, K.84, H.85 Chain H: L.75 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain G: E.14, S.36, K.38, E.39 Ligand excluded by PLIP

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: K.33, A.34, K.35, R.40 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.35 Salt bridges: A:K.33, A:K.35, A:R.40 SO4.3: 4 residues within 4Å: Chain A: K.83 Chain B: K.83 Chain C: K.83 Chain D: K.83 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain A Salt bridges: C:K.83, B:K.83, A:K.83 SO4.4: 4 residues within 4Å: Chain C: A.10, K.38, R.42 Chain E: K.35 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain E Water bridges: C:K.38 Salt bridges: C:K.38, C:R.42, E:K.35 SO4.8: 4 residues within 4Å: Chain E: K.33, A.34, K.35, R.40 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:K.35 Salt bridges: E:K.33, E:K.35, E:R.40 SO4.9: 4 residues within 4Å: Chain E: K.83 Chain F: K.83 Chain G: K.83 Chain H: K.83 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain E, 1 interactions with chain G Salt bridges: F:K.83, E:K.83, G:K.83 SO4.10: 4 residues within 4Å: Chain A: K.35 Chain G: A.10, K.38, R.42 4 PLIP interactions: 3 interactions with chain G, 1 interactions with chain A Water bridges: G:K.38 Salt bridges: G:K.38, G:R.42, A:K.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Truglio, J.J. et al., Structural insights into the first incision reaction during nucleotide excision repair. Embo J. (2005)

Release Date

2005-03-01

Peptides

UvrC: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

UvrC

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