SMTL ID : 1yiw.5 (6 other biounits)

X-ray Crystal Structure of a Chemically Synthesized Ubiquitin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

homo-trimer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 1 residues within 4Å: Chain A: N.25 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain B: N.25 Ligands: CD.8 Ligand excluded by PLIP CL.16: 1 residues within 4Å: Chain C: N.25 Ligand excluded by PLIP

17 x CD: CADMIUM ION(Non-covalent)(Non-functional Binders)

CD.2: 1 residues within 4Å: Chain A: D.21 Ligand excluded by PLIP CD.3: 2 residues within 4Å: Chain A: E.24, D.52 Ligand excluded by PLIP CD.4: 1 residues within 4Å: Chain A: H.68 Ligand excluded by PLIP CD.5: 1 residues within 4Å: Chain A: D.58 Ligand excluded by PLIP CD.6: 1 residues within 4Å: Chain A: E.64 Ligand excluded by PLIP CD.7: 1 residues within 4Å: Chain A: D.39 Ligand excluded by PLIP CD.8: 1 residues within 4Å: Ligands: CL.9 Ligand excluded by PLIP CD.10: 1 residues within 4Å: Chain B: D.21 Ligand excluded by PLIP CD.11: 2 residues within 4Å: Chain B: E.24, D.52 Ligand excluded by PLIP CD.12: 1 residues within 4Å: Chain B: H.68 Ligand excluded by PLIP CD.13: 1 residues within 4Å: Chain B: D.58 Ligand excluded by PLIP CD.14: 1 residues within 4Å: Chain B: H.68 Ligand excluded by PLIP CD.15: 1 residues within 4Å: Chain B: E.18 Ligand excluded by PLIP CD.17: 2 residues within 4Å: Chain C: E.24, D.52 Ligand excluded by PLIP CD.18: 2 residues within 4Å: Chain B: D.39 Chain C: H.68 Ligand excluded by PLIP CD.19: 1 residues within 4Å: Chain C: D.58 Ligand excluded by PLIP CD.20: 1 residues within 4Å: Chain C: E.64 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bang, D. et al., X-ray Crystal Structure of a Chemically Synthesized [D-Gln35]Ubiquitin. Angew.Chem.Int.Ed.Engl. (2005)

Release Date

2005-06-14

Peptides

Ubiquitin: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
C

Ubiquitin

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