SMTL ID : 1ykj.1 (1 other biounit)

A45G p-hydroxybenzoate hydroxylase with p-hydroxybenzoate bound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: E.172 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.172 SO4.2: 3 residues within 4Å: Chain A: S.235, D.236, K.263 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.236 Water bridges: A:E.237, A:K.263, A:K.263 Salt bridges: A:K.263 SO4.3: 6 residues within 4Å: Chain A: V.71, H.72, E.73, G.74, R.85, E.198 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:V.71, A:E.73, A:G.74, A:E.198 Water bridges: A:H.72 Salt bridges: A:H.72, A:R.85 SO4.4: 2 residues within 4Å: Chain A: Y.38, R.42 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.38 Water bridges: A:R.44 Salt bridges: A:R.42 SO4.5: 6 residues within 4Å: Chain A: R.42, I.43, R.44, R.220, E.262, S.264 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.43, A:R.44, A:S.264 Water bridges: A:S.264 Salt bridges: A:R.220 SO4.8: 5 residues within 4Å: Chain B: R.85, D.87, L.88, K.89, R.90 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:D.87, B:D.87, B:K.89, B:R.90 Water bridges: B:R.85, B:R.85, B:R.85, B:L.88, B:L.88, B:K.89 Salt bridges: B:R.85, B:K.89 SO4.9: 3 residues within 4Å: Chain B: G.81, P.248, S.249 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.249 Water bridges: B:G.81, B:E.250 SO4.10: 4 residues within 4Å: Chain B: D.131, G.134, E.135, R.136 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.131, B:E.135, B:R.136 Water bridges: B:D.131 SO4.11: 6 residues within 4Å: Chain B: R.42, I.43, R.44, R.220, E.262, S.264 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.41, B:I.43, B:R.44, B:S.264, B:S.264 Water bridges: B:R.220 Salt bridges: B:R.220 SO4.12: 4 residues within 4Å: Chain B: Q.133, Q.277, H.278, G.279 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.277, B:G.279 Water bridges: B:Q.277, B:E.326, B:E.326 Salt bridges: B:H.278 SO4.13: 3 residues within 4Å: Chain B: S.235, D.236, K.263 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.236 Water bridges: B:E.237 Salt bridges: B:K.263 SO4.14: 4 residues within 4Å: Chain B: Q.133, P.170, R.173, H.278 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.133 Salt bridges: B:R.173, B:H.278

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.6: 32 residues within 4Å: Chain A: I.8, G.9, G.11, P.12, S.13, L.31, E.32, R.33, Q.34, V.39, R.42, R.44, G.45, G.46, V.47, Q.102, V.127, C.158, D.159, G.160, G.163, I.164, Y.222, G.285, D.286, P.293, A.296, K.297, G.298, L.299, N.300 Ligands: PHB.7 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:Y.222, A:P.293 Hydrogen bonds: A:A.10, A:S.13, A:S.13, A:S.13, A:R.33, A:R.33, A:R.42, A:R.42, A:R.44, A:G.46, A:V.47, A:V.47, A:Q.102, A:Q.102, A:D.286, A:L.299, A:N.300, A:N.300 Water bridges: A:G.11, A:G.14, A:R.33, A:G.45, A:G.45, A:V.127, A:G.160, A:G.163, A:D.286, A:K.297, A:A.302 Salt bridges: A:R.42, A:R.44 FAD.15: 33 residues within 4Å: Chain B: I.8, G.9, G.11, P.12, S.13, L.31, E.32, R.33, Q.34, V.39, R.42, R.44, G.45, G.46, V.47, Q.102, V.127, C.158, D.159, G.160, G.163, I.164, Y.222, A.266, G.285, D.286, P.293, A.296, K.297, G.298, L.299, N.300 Ligands: PHB.16 44 PLIP interactions: 44 interactions with chain B Hydrophobic interactions: B:Y.222, B:A.266, B:P.293 Hydrogen bonds: B:S.13, B:S.13, B:S.13, B:R.33, B:R.33, B:R.42, B:R.42, B:R.44, B:G.46, B:V.47, B:V.47, B:Q.102, B:Q.102, B:I.164, B:D.286, B:G.298, B:L.299, B:N.300, B:N.300 Water bridges: B:G.11, B:G.14, B:R.33, B:R.33, B:R.44, B:R.44, B:G.45, B:G.45, B:V.127, B:V.127, B:G.160, B:H.162, B:G.163, B:D.286, B:D.286, B:D.286, B:D.286, B:D.286, B:A.287, B:K.297, B:A.302 Salt bridges: B:R.44

2 x PHB: P-HYDROXYBENZOIC ACID(Non-covalent)

PHB.7: 16 residues within 4Å: Chain A: R.44, G.45, G.46, V.47, W.185, L.199, Y.201, L.210, S.212, R.214, R.220, Y.222, P.293, T.294, A.296 Ligands: FAD.6 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.47, A:W.185, A:L.199, A:Y.222 Hydrogen bonds: A:G.46, A:S.212, A:S.212, A:P.293, A:A.296 Salt bridges: A:R.214 PHB.16: 15 residues within 4Å: Chain B: R.44, G.45, G.46, V.47, W.185, Y.201, L.210, S.212, R.214, R.220, Y.222, P.293, T.294, A.296 Ligands: FAD.15 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:V.47, B:W.185, B:L.210, B:Y.222 Hydrogen bonds: B:G.46, B:Y.201, B:S.212, B:S.212, B:Y.222, B:P.293, B:A.296 Salt bridges: B:R.214

2 x PSL: PYROSULFATE(Non-covalent)

PSL.17: 3 residues within 4Å: Chain B: H.162, P.267, R.269 3 PLIP interactions: 3 interactions with chain B Salt bridges: B:H.162, B:H.162, B:R.269 PSL.18: 4 residues within 4Å: Chain B: R.33, A.125, E.126, R.128 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:E.126 Water bridges: B:R.33, B:R.33, B:V.127 Salt bridges: B:R.33, B:R.33, B:R.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cole, L.J. et al., Removal of a methyl group causes global changes in p-hydroxybenzoate hydroxylase. Biochemistry (2005)

Release Date

2005-07-26

Peptides

P-hydroxybenzoate hydroxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

P-hydroxybenzoate hydroxylase

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