SMTL ID : 1ylo.1

Crystal Structure of Protein of Unknown Function (Possible Aminopeptidase) S2589 from Shigella flexneri 2a str. 2457T

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-12-mer

Ligands

24 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.65, D.169, E.202, D.224 Ligands: ZN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.65, A:D.169, A:D.224, A:D.224, H2O.1 ZN.2: 4 residues within 4Å: Chain A: D.169, E.202, H.311 Ligands: ZN.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.169, A:E.202, A:E.202, A:H.311, H2O.1 ZN.3: 6 residues within 4Å: Chain B: H.65, D.169, E.201, E.202, D.224 Ligands: ZN.4 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.65, B:D.169, B:D.224, H2O.6, H2O.7 ZN.4: 4 residues within 4Å: Chain B: D.169, E.202, H.311 Ligands: ZN.3 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.169, B:E.202, B:E.202, B:H.311, H2O.6 ZN.5: 6 residues within 4Å: Chain C: H.65, D.169, E.201, E.202, D.224 Ligands: ZN.6 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.65, C:D.169, C:D.224, C:D.224, H2O.11 ZN.6: 4 residues within 4Å: Chain C: D.169, E.202, H.311 Ligands: ZN.5 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.169, C:E.202, C:E.202, C:H.311, H2O.11 ZN.7: 6 residues within 4Å: Chain D: H.65, D.169, E.201, E.202, D.224 Ligands: ZN.8 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.65, D:D.169, D:D.224, D:D.224, H2O.16 ZN.8: 4 residues within 4Å: Chain D: D.169, E.202, H.311 Ligands: ZN.7 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.169, D:E.202, D:E.202, D:H.311, H2O.16 ZN.9: 6 residues within 4Å: Chain E: H.65, D.169, E.201, E.202, D.224 Ligands: ZN.10 5 PLIP interactions: 3 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:H.65, E:D.169, E:D.224, H2O.18, H2O.21 ZN.10: 4 residues within 4Å: Chain E: D.169, E.202, H.311 Ligands: ZN.9 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:D.169, E:E.202, E:E.202, E:H.311, H2O.18 ZN.11: 6 residues within 4Å: Chain F: H.65, D.169, E.201, E.202, D.224 Ligands: ZN.12 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:H.65, F:D.169, F:D.224, F:D.224, H2O.22 ZN.12: 4 residues within 4Å: Chain F: D.169, E.202, H.311 Ligands: ZN.11 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:D.169, F:E.202, F:E.202, F:H.311, H2O.22 ZN.13: 5 residues within 4Å: Chain G: H.65, D.169, E.202, D.224 Ligands: ZN.14 5 PLIP interactions: 4 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:H.65, G:D.169, G:D.224, G:D.224, H2O.27 ZN.14: 4 residues within 4Å: Chain G: D.169, E.202, H.311 Ligands: ZN.13 5 PLIP interactions: 4 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:D.169, G:E.202, G:E.202, G:H.311, H2O.27 ZN.15: 6 residues within 4Å: Chain H: H.65, D.169, E.201, E.202, D.224 Ligands: ZN.16 5 PLIP interactions: 3 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:H.65, H:D.169, H:D.224, H2O.32, H2O.33 ZN.16: 4 residues within 4Å: Chain H: D.169, E.202, H.311 Ligands: ZN.15 5 PLIP interactions: 4 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:D.169, H:E.202, H:E.202, H:H.311, H2O.32 ZN.17: 6 residues within 4Å: Chain I: H.65, D.169, E.201, E.202, D.224 Ligands: ZN.18 5 PLIP interactions: 4 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:H.65, I:D.169, I:D.224, I:D.224, H2O.37 ZN.18: 4 residues within 4Å: Chain I: D.169, E.202, H.311 Ligands: ZN.17 5 PLIP interactions: 4 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:D.169, I:E.202, I:E.202, I:H.311, H2O.37 ZN.19: 6 residues within 4Å: Chain J: H.65, D.169, E.201, E.202, D.224 Ligands: ZN.20 5 PLIP interactions: 4 interactions with chain J, 1 Ligand-Water interactions Metal complexes: J:H.65, J:D.169, J:D.224, J:D.224, H2O.42 ZN.20: 4 residues within 4Å: Chain J: D.169, E.202, H.311 Ligands: ZN.19 5 PLIP interactions: 4 interactions with chain J, 1 Ligand-Water interactions Metal complexes: J:D.169, J:E.202, J:E.202, J:H.311, H2O.42 ZN.21: 6 residues within 4Å: Chain K: H.65, D.169, E.201, E.202, D.224 Ligands: ZN.22 5 PLIP interactions: 3 interactions with chain K, 2 Ligand-Water interactions Metal complexes: K:H.65, K:D.169, K:D.224, H2O.44, H2O.47 ZN.22: 4 residues within 4Å: Chain K: D.169, E.202, H.311 Ligands: ZN.21 5 PLIP interactions: 4 interactions with chain K, 1 Ligand-Water interactions Metal complexes: K:D.169, K:E.202, K:E.202, K:H.311, H2O.44 ZN.23: 6 residues within 4Å: Chain L: H.65, D.169, E.201, E.202, D.224 Ligands: ZN.24 5 PLIP interactions: 4 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:H.65, L:D.169, L:D.224, L:D.224, H2O.49 ZN.24: 4 residues within 4Å: Chain L: D.169, E.202, H.311 Ligands: ZN.23 5 PLIP interactions: 4 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:D.169, L:E.202, L:E.202, L:H.311, H2O.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nocek, B.P. et al., Crystal Structure of hypothetical protein from Shigella flexneri 2a. To be Published

Release Date

2005-03-08

Peptides

hypothetical protein SF2450: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
A

H
B

I
C

J
D

K
E

L
F

hypothetical protein SF2450