- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.22 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 12 x CA: CALCIUM ION(Non-covalent)
CA.2: 4 residues within 4Å:- Chain A: D.427, N.454, T.456
- Ligands: TZD.5
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.427, A:T.456, H2O.18
CA.3: 1 residues within 4Å:- Chain A: D.363
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:D.363, H2O.6, H2O.14, H2O.21, H2O.22
CA.4: 1 residues within 4Å:- Chain A: A.415
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:A.415, H2O.4, H2O.11, H2O.12, H2O.13
CA.7: 4 residues within 4Å:- Chain B: D.427, N.454, T.456
- Ligands: TZD.10
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.427, B:T.456, H2O.40
CA.8: 1 residues within 4Å:- Chain B: D.363
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:D.363, H2O.28, H2O.36, H2O.42, H2O.43
CA.9: 1 residues within 4Å:- Chain B: A.415
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:A.415, H2O.25, H2O.33, H2O.34, H2O.35
CA.12: 4 residues within 4Å:- Chain C: D.427, N.454, T.456
- Ligands: TZD.15
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.427, C:T.456, H2O.61
CA.13: 1 residues within 4Å:- Chain C: D.363
5 PLIP interactions:1 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: C:D.363, H2O.49, H2O.57, H2O.64, H2O.65
CA.14: 1 residues within 4Å:- Chain C: A.415
5 PLIP interactions:1 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: C:A.415, H2O.47, H2O.54, H2O.55, H2O.56
CA.17: 4 residues within 4Å:- Chain D: D.427, N.454, T.456
- Ligands: TZD.20
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.427, D:T.456, H2O.83
CA.18: 1 residues within 4Å:- Chain D: D.363
5 PLIP interactions:1 interactions with chain D, 4 Ligand-Water interactions- Metal complexes: D:D.363, H2O.71, H2O.79, H2O.85, H2O.86
CA.19: 1 residues within 4Å:- Chain D: A.415
5 PLIP interactions:1 interactions with chain D, 4 Ligand-Water interactions- Metal complexes: D:A.415, H2O.68, H2O.76, H2O.77, H2O.78
- 4 x TZD: 2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-4-METHYL-2-OXO-2,3-DIHYDRO-1,3-THIAZOL-5-YL}ETHYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)
TZD.5: 25 residues within 4Å:- Chain A: E.374, S.375, T.376, S.377, G.400, G.401, L.402, G.426, D.427, G.428, S.429, Y.432, N.454, T.456, Y.457, G.458, A.459, L.460
- Chain B: N.22, P.23, G.24, E.46, H.69, N.76
- Ligands: CA.2
18 PLIP interactions:17 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:Y.432, A:L.460
- Hydrogen bonds: A:T.376, A:S.377, A:G.400, A:L.402, A:G.426, A:G.428, A:S.429, A:S.429, A:Y.432, A:N.454, A:N.454, A:G.458, A:A.459
- Water bridges: A:D.427, A:N.454, B:H.69
TZD.10: 25 residues within 4Å:- Chain A: N.22, P.23, G.24, E.46, H.69, N.76
- Chain B: E.374, S.375, T.376, S.377, G.400, G.401, L.402, G.426, D.427, G.428, S.429, Y.432, N.454, T.456, Y.457, G.458, A.459, L.460
- Ligands: CA.7
18 PLIP interactions:17 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:Y.432, B:L.460
- Hydrogen bonds: B:T.376, B:S.377, B:G.400, B:L.402, B:G.426, B:G.428, B:S.429, B:S.429, B:Y.432, B:N.454, B:N.454, B:G.458, B:A.459
- Water bridges: B:D.427, B:N.454, A:H.69
TZD.15: 25 residues within 4Å:- Chain C: E.374, S.375, T.376, S.377, G.400, G.401, L.402, G.426, D.427, G.428, S.429, Y.432, N.454, T.456, Y.457, G.458, A.459, L.460
- Chain D: N.22, P.23, G.24, E.46, H.69, N.76
- Ligands: CA.12
18 PLIP interactions:17 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:Y.432, C:L.460
- Hydrogen bonds: C:T.376, C:T.376, C:S.377, C:G.400, C:L.402, C:G.426, C:D.427, C:G.428, C:S.429, C:S.429, C:N.454, C:G.458, C:A.459
- Water bridges: C:D.427, C:N.454, D:H.69
TZD.20: 25 residues within 4Å:- Chain C: N.22, P.23, G.24, E.46, H.69, N.76
- Chain D: E.374, S.375, T.376, S.377, G.400, G.401, L.402, G.426, D.427, G.428, S.429, Y.432, N.454, T.456, Y.457, G.458, A.459, L.460
- Ligands: CA.17
18 PLIP interactions:17 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:Y.432, D:L.460
- Hydrogen bonds: D:T.376, D:T.376, D:S.377, D:G.400, D:L.402, D:G.426, D:D.427, D:G.428, D:S.429, D:S.429, D:N.454, D:G.458, D:A.459
- Water bridges: D:D.427, D:N.454, C:H.69
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bera, A.K. et al., High Resolution Structure of Benzoylformate Decarboxylase from Pseudomonas Putida Complexed with Thiamine Thiazolone Diphosphate;. To be Published
- Release Date
- 2006-01-17
- Peptides
- Benzoylformate decarboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.22 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 12 x CA: CALCIUM ION(Non-covalent)
- 4 x TZD: 2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-4-METHYL-2-OXO-2,3-DIHYDRO-1,3-THIAZOL-5-YL}ETHYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bera, A.K. et al., High Resolution Structure of Benzoylformate Decarboxylase from Pseudomonas Putida Complexed with Thiamine Thiazolone Diphosphate;. To be Published
- Release Date
- 2006-01-17
- Peptides
- Benzoylformate decarboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A