SMTL ID : 1yqx.1

Sinapyl Alcohol Dehydrogenase at 2.5 Angstrom Resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.54, S.56, H.76, C.170 Ligands: NAP.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.54, A:H.76, A:C.170, H2O.1 ZN.2: 5 residues within 4Å: Chain A: C.107, H.108, C.110, C.113, C.121 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.107, A:C.110, A:C.113, A:C.121 ZN.4: 5 residues within 4Å: Chain B: C.107, H.108, C.110, C.113, C.121 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.107, B:C.110, B:C.113, B:C.121 ZN.5: 4 residues within 4Å: Chain B: C.54, H.76, C.170 Ligands: NAP.6 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.54, B:H.76, B:C.170, H2O.1

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.3: 31 residues within 4Å: Chain A: C.54, H.55, S.56, H.59, W.65, C.170, T.174, G.195, L.196, G.197, G.198, L.199, S.218, T.219, S.220, K.223, T.258, V.259, S.260, A.261, V.281, G.282, A.283, S.305, G.306, I.307, L.344, N.347, R.352 Chain B: I.296 Ligands: ZN.1 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:T.174, A:L.199 Hydrogen bonds: A:H.55, A:H.59, A:T.174, A:L.196, A:G.198, A:L.199, A:T.219, A:S.220, A:K.223, A:V.281, A:A.283, A:I.307, A:N.347, A:R.352 Water bridges: A:G.197, A:G.200 Salt bridges: A:H.55, A:K.223, A:R.352 NAP.6: 31 residues within 4Å: Chain A: I.296 Chain B: C.54, H.55, S.56, H.59, W.65, C.170, T.174, G.195, L.196, G.197, G.198, L.199, S.218, T.219, S.220, K.223, T.258, V.259, S.260, A.261, V.281, G.282, A.283, S.305, G.306, I.307, L.344, N.347, R.352 Ligands: ZN.5 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:T.174, B:L.199 Hydrogen bonds: B:H.55, B:H.59, B:L.196, B:G.198, B:L.199, B:T.219, B:V.281, B:A.283, B:I.307, B:N.347 Water bridges: B:V.53 Salt bridges: B:H.55, B:K.223, B:R.352

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bomati, E.K. et al., Structural and Kinetic Basis for Substrate Selectivity in Populus tremuloides Sinapyl Alcohol Dehydrogenase. Plant Cell (2005)

Release Date

2005-07-12

Peptides

sinapyl alcohol dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

sinapyl alcohol dehydrogenase

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