SMTL ID : 1yt0.1

Crystal Structure of the Unliganded Form of GRP94, the ER Hsp90: Basis for Nucleotide-Induced Conformational Change, GRP94N(DELTA)41 APO CRYSTAL SOAKED WITH ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: N.43 Ligands: ADP.2 No protein-ligand interaction detected (PLIP)

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 10 residues within 4Å: Chain A: N.43, A.47, D.85, M.90, N.98, L.99, G.134, F.135, T.181 Ligands: MG.1 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:N.43, A:D.85, A:F.135, A:T.181 Water bridges: A:N.43, A:D.46, A:A.47, A:K.50, A:G.89, A:G.134, A:Y.136

6 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 4 residues within 4Å: Chain A: T.148, R.173, T.182 Ligands: PG4.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.173, A:R.173, A:T.184 Water bridges: A:T.148 PG4.4: 7 residues within 4Å: Chain A: K.73, H.82, T.84, T.182, W.218 Ligands: PG4.3, PG4.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.73, A:T.182, A:T.182 PG4.5: 4 residues within 4Å: Chain A: N.19, M.22, K.23, S.163 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.19 PG4.6: 8 residues within 4Å: Chain A: N.65, K.71, K.73, T.84, T.86, L.177, W.232 Ligands: PG4.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.65, A:K.73, A:L.177 PG4.7: 3 residues within 4Å: Chain A: M.21, L.24, S.28 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.28 PG4.8: 3 residues within 4Å: Chain A: N.175, T.176, G.178 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dollins, D.E. et al., Structure of Unliganded GRP94, the Endoplasmic Reticulum Hsp90: BASIS FOR NUCLEOTIDE-INDUCED CONFORMATIONAL CHANGE. J.Biol.Chem. (2005)

Release Date

2005-06-14

Peptides

Endoplasmin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endoplasmin

Related Entries With Identical Sequence