SMTL ID : 1yya.1

Crystal structure of TT0473, putative Triosephosphate Isomerase from Thermus thermophilus HB8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: L.222, M.224, V.227 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.222, A:V.227 NA.6: 3 residues within 4Å: Chain B: L.222, M.224, V.227 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:M.224, B:V.227

7 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 2 residues within 4Å: Chain A: S.17, R.20 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Water bridges: A:P.16, A:R.20, A:R.20, A:R.20, B:K.50, B:D.84 Salt bridges: A:R.20, B:K.50 PO4.3: 8 residues within 4Å: Chain A: K.11, A.170, I.171, G.172, G.211, S.212, G.233, G.234 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.172, A:S.212, A:S.212, A:G.233, A:G.234 Water bridges: A:K.11, A:K.11, A:G.211, A:V.213, A:V.213, A:A.235 Salt bridges: A:K.11 PO4.4: 3 residues within 4Å: Chain A: H.68, K.69, E.70 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.69, A:E.70, A:E.70 Water bridges: A:H.68, A:E.70 Salt bridges: A:H.68 PO4.5: 3 residues within 4Å: Chain A: H.13, K.14 Chain B: R.80 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.14 Salt bridges: A:H.13, B:R.80 PO4.7: 3 residues within 4Å: Chain A: K.50 Chain B: S.17, R.20 9 PLIP interactions: 4 interactions with chain B, 5 interactions with chain A Water bridges: B:R.20, B:R.20, B:R.20, A:K.50, A:K.50, A:K.50, A:D.84 Salt bridges: B:R.20, A:K.50 PO4.8: 4 residues within 4Å: Chain A: E.70, R.80 Chain B: H.13, K.14 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:K.14 Water bridges: B:K.14, A:R.80, A:R.80 Salt bridges: B:H.13, A:R.80 PO4.9: 7 residues within 4Å: Chain B: A.170, I.171, G.172, G.211, S.212, G.233, G.234 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:A.170, B:G.172, B:S.212, B:G.233, B:G.234 Water bridges: B:K.11, B:K.11, B:V.213, B:V.213, B:V.213, B:A.235 Salt bridges: B:K.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamamoto, H. et al., Crystal structure of TT0473, putative Triosephosphate Isomerase from Thermus thermophilus HB8. To be Published

Release Date

2005-03-15

Peptides

triosephosphate isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

triosephosphate isomerase