SMTL ID : 1z48.1

Crystal structure of reduced YqjM from Bacillus subtilis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 16 residues within 4Å: Chain A: S.23, P.24, M.25, C.26, A.60, Q.102, H.164, H.167, R.215, V.283, G.284, M.285, I.306, G.307, R.308 Chain B: R.336 20 PLIP interactions: 19 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:R.308, B:R.336 Hydrogen bonds: A:S.23, A:S.23, A:P.24, A:C.26, A:A.60, A:Q.102, A:Q.102, A:R.215, A:R.215, A:G.284, A:G.307, A:R.308 Water bridges: A:I.286, A:I.286, A:R.308, A:R.308, A:E.309 Salt bridges: A:R.308 FMN.2: 16 residues within 4Å: Chain A: R.336 Chain B: S.23, P.24, M.25, C.26, A.60, Q.102, H.164, H.167, R.215, V.283, G.284, M.285, I.306, G.307, R.308 22 PLIP interactions: 19 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:R.308, A:R.336 Hydrogen bonds: B:S.23, B:S.23, B:P.24, B:C.26, B:A.60, B:Q.102, B:Q.102, B:R.215, B:R.215, B:G.284, B:G.307, B:R.308 Water bridges: B:I.286, B:I.286, B:R.308, B:R.308, B:E.309, A:R.336 Salt bridges: B:R.308 pi-Cation interactions: A:R.336 FMN.3: 16 residues within 4Å: Chain C: S.23, P.24, M.25, C.26, A.60, Q.102, H.164, H.167, R.215, V.283, G.284, M.285, I.306, G.307, R.308 Chain D: R.336 22 PLIP interactions: 21 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:R.308, D:R.336 Hydrogen bonds: C:S.23, C:S.23, C:P.24, C:C.26, C:A.60, C:Q.102, C:Q.102, C:H.167, C:R.215, C:R.215, C:G.284, C:G.307, C:R.308 Water bridges: C:Y.169, C:I.286, C:I.286, C:R.308, C:R.308, C:E.309 Salt bridges: C:R.308 FMN.4: 16 residues within 4Å: Chain C: R.336 Chain D: S.23, P.24, M.25, C.26, A.60, Q.102, H.164, H.167, R.215, V.283, G.284, M.285, I.306, G.307, R.308 24 PLIP interactions: 21 interactions with chain D, 3 interactions with chain C Hydrophobic interactions: D:R.308, C:R.336 Hydrogen bonds: D:S.23, D:S.23, D:P.24, D:C.26, D:A.60, D:Q.102, D:Q.102, D:H.167, D:R.215, D:R.215, D:G.284, D:G.307, D:R.308 Water bridges: D:Y.169, D:I.286, D:I.286, D:R.308, D:R.308, D:E.309, C:R.336 Salt bridges: D:R.308 pi-Cation interactions: C:R.336

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kitzing, K. et al., The 1.3 A Crystal Structure of the Flavoprotein YqjM Reveals a Novel Class of Old Yellow Enzymes. J.Biol.Chem. (2005)

Release Date

2005-05-17

Peptides

Probable NADH-dependent flavin oxidoreductase yqjM: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Probable NADH-dependent flavin oxidoreductase yqjM

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