SMTL ID : 1z5h.3 (3 other biounits)

Crystal structures of the Tricorn interacting Factor F3 from Thermoplasma acidophilum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

34 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.711, R.715 Chain B: R.708, R.711 Ligand excluded by PLIP SO4.2: 2 residues within 4Å: Chain A: K.677 Chain B: T.718 Ligand excluded by PLIP SO4.3: 5 residues within 4Å: Chain A: Y.409, N.413, R.444 Chain D: Y.172, Y.174 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: T.559, H.560, A.561 Ligand excluded by PLIP SO4.5: 4 residues within 4Å: Chain A: Y.194, K.256, R.257, F.303 Ligand excluded by PLIP SO4.6: 2 residues within 4Å: Chain A: P.505, R.508 Ligand excluded by PLIP SO4.7: 2 residues within 4Å: Chain A: F.516, G.550 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain A: K.682, F.717 Chain B: K.677 Ligand excluded by PLIP SO4.9: 7 residues within 4Å: Chain A: G.439, E.440, S.521, G.522, H.523 Chain D: K.140, R.141 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain A: K.140, R.141, E.151 Ligands: SO4.11 Ligand excluded by PLIP SO4.11: 2 residues within 4Å: Chain A: K.140 Ligands: SO4.10 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain A: K.580, Q.581, D.582, L.585 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain A: R.648, D.649, E.650 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain A: R.708, R.711 Chain B: R.711, R.715 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain A: T.718 Chain B: K.677 Ligand excluded by PLIP SO4.17: 5 residues within 4Å: Chain B: Y.409, N.413, R.444 Chain C: Y.172, Y.174 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain B: T.559, H.560, A.561 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain B: Y.194, K.256, R.257, F.303 Ligand excluded by PLIP SO4.20: 2 residues within 4Å: Chain B: P.505, R.508 Ligand excluded by PLIP SO4.21: 2 residues within 4Å: Chain B: F.516, G.550 Ligand excluded by PLIP SO4.22: 3 residues within 4Å: Chain A: K.677 Chain B: K.682, F.717 Ligand excluded by PLIP SO4.23: 7 residues within 4Å: Chain B: G.439, E.440, S.521, G.522, H.523 Chain C: K.140, R.141 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain B: K.140, R.141, E.151 Ligands: SO4.25 Ligand excluded by PLIP SO4.25: 2 residues within 4Å: Chain B: K.140 Ligands: SO4.24 Ligand excluded by PLIP SO4.26: 4 residues within 4Å: Chain B: K.580, Q.581, D.582, L.585 Ligand excluded by PLIP SO4.27: 3 residues within 4Å: Chain B: R.648, D.649, E.650 Ligand excluded by PLIP SO4.29: 5 residues within 4Å: Chain C: D.7, T.22, E.23, T.24, E.72 Ligand excluded by PLIP SO4.30: 6 residues within 4Å: Chain C: Y.409, N.413, P.414, E.442, R.444, W.445 Ligand excluded by PLIP SO4.31: 3 residues within 4Å: Chain C: V.112, H.114, Y.117 Ligand excluded by PLIP SO4.32: 3 residues within 4Å: Chain C: T.559, H.560, A.561 Ligand excluded by PLIP SO4.34: 5 residues within 4Å: Chain D: D.7, T.22, E.23, T.24, E.72 Ligand excluded by PLIP SO4.35: 6 residues within 4Å: Chain D: Y.409, N.413, P.414, E.442, R.444, W.445 Ligand excluded by PLIP SO4.36: 3 residues within 4Å: Chain D: V.112, H.114, Y.117 Ligand excluded by PLIP SO4.37: 3 residues within 4Å: Chain D: T.559, H.560, A.561 Ligand excluded by PLIP

4 x ZN: ZINC ION(Non-covalent)

ZN.14: 3 residues within 4Å: Chain A: H.265, H.269, E.288 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.265, A:H.269, A:E.288, A:E.288, H2O.17 ZN.28: 3 residues within 4Å: Chain B: H.265, H.269, E.288 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.265, B:H.269, B:E.288, B:E.288, H2O.34 ZN.33: 4 residues within 4Å: Chain C: H.265, E.266, H.269, E.288 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.265, C:H.269, C:E.288 ZN.38: 4 residues within 4Å: Chain D: H.265, E.266, H.269, E.288 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.265, D:H.269, D:E.288

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kyrieleis, O.J.P. et al., Crystal Structures of the Tricorn Interacting Factor F3 from Thermoplasma acidophilum, a Zinc Aminopeptidase in Three Different Conformations. J.MOL.BIOL. (2005)

Release Date

2005-06-28

Peptides

Tricorn protease interacting factor F3: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
B

D
B

Tricorn protease interacting factor F3

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