SMTL ID : 1z7e.1

Crystal structure of full length ArnA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-hexamer

Ligands

6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 15 residues within 4Å: Chain A: G.322, N.324, G.325, F.326, I.327, D.347, I.348, G.367, D.368, I.369, L.389, V.390, A.391, A.393, R.510 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.324, A:F.326, A:I.327, A:I.348, A:G.349, A:D.368, A:I.369, A:A.391 Salt bridges: A:R.510, A:R.510 ATP.3: 16 residues within 4Å: Chain B: G.322, N.324, G.325, F.326, I.327, D.347, I.348, G.367, D.368, I.369, L.389, V.390, A.391, A.393, L.408, R.510 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:N.324, B:F.326, B:I.327, B:I.348, B:G.349, B:D.368, B:I.369, B:A.391 Salt bridges: B:R.510, B:R.510 ATP.5: 15 residues within 4Å: Chain C: G.322, N.324, G.325, F.326, I.327, D.347, I.348, G.367, D.368, I.369, L.389, V.390, A.391, A.393, R.510 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:N.324, C:F.326, C:I.327, C:I.348, C:G.349, C:D.368, C:I.369, C:A.391 Salt bridges: C:R.510, C:R.510 ATP.7: 15 residues within 4Å: Chain D: G.322, N.324, G.325, F.326, I.327, D.347, I.348, G.367, D.368, I.369, L.389, V.390, A.391, A.393, R.510 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:N.324, D:F.326, D:I.327, D:I.348, D:G.349, D:D.368, D:I.369, D:A.391, D:R.510 Salt bridges: D:R.510, D:R.510 ATP.9: 15 residues within 4Å: Chain E: G.322, N.324, G.325, F.326, I.327, D.347, I.348, G.367, D.368, I.369, L.389, V.390, A.391, A.393, R.510 10 PLIP interactions: 10 interactions with chain E Hydrogen bonds: E:F.326, E:I.327, E:I.348, E:G.349, E:D.368, E:I.369, E:A.391, E:R.510 Salt bridges: E:R.510, E:R.510 ATP.11: 16 residues within 4Å: Chain F: G.322, N.324, G.325, F.326, I.327, D.347, I.348, G.367, D.368, I.369, L.389, V.390, A.391, A.393, L.408, R.510 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:N.324, F:F.326, F:I.327, F:I.348, F:D.368, F:I.369, F:A.391 Salt bridges: F:R.510, F:R.510

6 x UGA: URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID(Non-covalent)

UGA.2: 26 residues within 4Å: Chain A: A.393, P.395, Y.398, T.432, S.433, E.434, R.460, Y.463, P.490, F.491, N.492, W.493, R.510, A.511, Q.514, L.515, K.526, L.527, I.528, Q.533, R.535, I.574, Y.609, Y.613, D.615, R.619 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:A.393, A:Y.398, A:Y.398, A:T.432, A:T.432, A:S.433, A:S.433, A:S.433, A:R.460, A:Y.463, A:N.492, A:N.492, A:W.493, A:A.511, A:K.526, A:I.528, A:R.535, A:Y.609, A:Y.613, A:Y.613 Salt bridges: A:R.460, A:R.535, A:R.619, A:R.619, A:R.619 UGA.4: 26 residues within 4Å: Chain B: A.393, P.395, Y.398, T.432, S.433, E.434, R.460, Y.463, P.490, F.491, N.492, W.493, R.510, A.511, Q.514, L.515, K.526, L.527, I.528, Q.533, R.535, I.574, Y.609, Y.613, D.615, R.619 25 PLIP interactions: 25 interactions with chain B Hydrogen bonds: B:Y.398, B:Y.398, B:T.432, B:T.432, B:S.433, B:S.433, B:S.433, B:E.434, B:R.460, B:Y.463, B:N.492, B:N.492, B:W.493, B:A.511, B:K.526, B:I.528, B:R.535, B:Y.609, B:Y.613, B:Y.613 Salt bridges: B:R.460, B:R.535, B:R.619, B:R.619, B:R.619 UGA.6: 26 residues within 4Å: Chain C: A.393, P.395, Y.398, T.432, S.433, E.434, R.460, Y.463, P.490, F.491, N.492, W.493, R.510, A.511, Q.514, L.515, K.526, L.527, I.528, Q.533, R.535, I.574, Y.609, Y.613, D.615, R.619 24 PLIP interactions: 24 interactions with chain C Hydrogen bonds: C:Y.398, C:T.432, C:T.432, C:S.433, C:S.433, C:S.433, C:E.434, C:E.434, C:R.460, C:N.492, C:N.492, C:W.493, C:A.511, C:K.526, C:I.528, C:R.535, C:Y.609, C:Y.613, C:Y.613 Salt bridges: C:R.460, C:R.535, C:R.619, C:R.619, C:R.619 UGA.8: 26 residues within 4Å: Chain D: A.393, P.395, Y.398, T.432, S.433, E.434, R.460, Y.463, P.490, F.491, N.492, W.493, R.510, A.511, Q.514, L.515, K.526, L.527, I.528, Q.533, R.535, I.574, Y.609, Y.613, D.615, R.619 26 PLIP interactions: 26 interactions with chain D Hydrophobic interactions: D:A.511 Hydrogen bonds: D:Y.398, D:Y.398, D:T.432, D:T.432, D:S.433, D:S.433, D:S.433, D:E.434, D:R.460, D:Y.463, D:N.492, D:N.492, D:W.493, D:A.511, D:K.526, D:I.528, D:R.535, D:Y.609, D:Y.613, D:Y.613 Salt bridges: D:R.460, D:R.535, D:R.619, D:R.619, D:R.619 UGA.10: 26 residues within 4Å: Chain E: A.393, P.395, Y.398, T.432, S.433, E.434, R.460, Y.463, P.490, F.491, N.492, W.493, R.510, A.511, Q.514, L.515, K.526, L.527, I.528, Q.533, R.535, I.574, Y.609, Y.613, D.615, R.619 24 PLIP interactions: 24 interactions with chain E Hydrogen bonds: E:Y.398, E:Y.398, E:T.432, E:T.432, E:S.433, E:S.433, E:S.433, E:R.460, E:Y.463, E:N.492, E:N.492, E:W.493, E:A.511, E:K.526, E:I.528, E:R.535, E:Y.609, E:Y.613, E:Y.613 Salt bridges: E:R.460, E:R.535, E:R.619, E:R.619, E:R.619 UGA.12: 26 residues within 4Å: Chain F: A.393, P.395, Y.398, T.432, S.433, E.434, R.460, Y.463, P.490, F.491, N.492, W.493, R.510, A.511, Q.514, L.515, K.526, L.527, I.528, Q.533, R.535, I.574, Y.609, Y.613, D.615, R.619 23 PLIP interactions: 23 interactions with chain F Hydrogen bonds: F:Y.398, F:T.432, F:T.432, F:S.433, F:S.433, F:S.433, F:E.434, F:R.460, F:N.492, F:N.492, F:W.493, F:A.511, F:K.526, F:I.528, F:R.535, F:Y.609, F:Y.613, F:Y.613 Salt bridges: F:R.460, F:R.535, F:R.619, F:R.619, F:R.619

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gatzeva-Topalova, P.Z. et al., Structure and Mechanism of ArnA: Conformational Change Implies Ordered Dehydrogenase Mechanism in Key Enzyme for Polymyxin Resistance. Structure (2005)

Release Date

2005-06-07

Peptides

protein ArnA: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

protein ArnA

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