- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 4.60 Å
- Oligo State
- hetero-oligomer
- Ligands
- 2 x FE: FE (III) ION(Non-covalent)
- 2 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 3 residues within 4Å:- Chain C: H.128
- Chain F: H.128
- Ligands: MN.12
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain F- Metal complexes: C:H.128, F:H.128
MN.12: 3 residues within 4Å:- Chain C: H.128
- Chain F: H.128
- Ligands: MN.2
2 PLIP interactions:1 interactions with chain F, 1 interactions with chain C- Metal complexes: F:H.128, C:H.128
- 8 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
BCL.3: 13 residues within 4Å:- Chain A: M.174, I.177, S.178, F.181, T.182
- Chain B: M.122, H.182, L.183, T.186
- Ligands: BCL.4, BCL.5, BPH.7, U10.10
8 PLIP interactions:5 interactions with chain A, 3 interactions with chain B,- Hydrophobic interactions: A:I.177, A:F.181, A:T.182
- pi-Stacking: A:F.181, A:F.181, B:H.182, B:H.182
- Metal complexes: B:H.182
BCL.4: 22 residues within 4Å:- Chain A: F.97, A.124, A.127, Y.128, L.131, V.157, S.158, Y.162, N.166, F.167, H.168, H.173, I.177, F.180, S.244, A.245, C.247, M.248
- Ligands: BCL.3, BCL.5, BCL.6, BPH.8
13 PLIP interactions:13 interactions with chain A,- Hydrophobic interactions: A:F.97, A:F.97, A:A.127, A:V.157, A:Y.162, A:F.167, A:F.167, A:I.177, A:F.180, A:F.180
- pi-Stacking: A:H.173, A:H.173
- Metal complexes: A:H.173
BCL.5: 23 residues within 4Å:- Chain A: Y.162, F.181
- Chain B: A.153, L.156, W.157, L.160, T.186, N.187, F.189, S.190, F.197, F.201, H.202, S.205, I.206, L.209, Y.210, G.280, I.284
- Ligands: BCL.3, BCL.4, BCL.6, BPH.7
13 PLIP interactions:13 interactions with chain B,- Hydrophobic interactions: B:A.153, B:W.157, B:T.186, B:F.189, B:F.197, B:F.197, B:I.206, B:L.209, B:Y.210
- pi-Stacking: B:H.202, B:H.202
- pi-Cation interactions: B:H.202
- Metal complexes: B:H.202
BCL.6: 14 residues within 4Å:- Chain A: Y.128, F.146, H.153, L.154
- Chain B: F.197, H.202, G.203, I.206, A.207, Y.210, G.211
- Ligands: BCL.4, BCL.5, BPH.8
8 PLIP interactions:3 interactions with chain B, 5 interactions with chain A,- Hydrophobic interactions: B:F.197, B:I.206, B:A.207, A:Y.128, A:F.146, A:L.154
- pi-Stacking: A:H.153, A:H.153
BCL.13: 13 residues within 4Å:- Chain D: M.174, I.177, S.178, F.181, T.182
- Chain E: M.122, H.182, L.183, T.186
- Ligands: BCL.14, BCL.15, BPH.17, U10.20
8 PLIP interactions:3 interactions with chain E, 5 interactions with chain D,- pi-Stacking: E:H.182, E:H.182, D:F.181, D:F.181
- Metal complexes: E:H.182
- Hydrophobic interactions: D:I.177, D:F.181, D:T.182
BCL.14: 22 residues within 4Å:- Chain D: F.97, A.124, A.127, Y.128, L.131, V.157, S.158, Y.162, N.166, F.167, H.168, H.173, I.177, F.180, S.244, A.245, C.247, M.248
- Ligands: BCL.13, BCL.15, BCL.16, BPH.18
13 PLIP interactions:13 interactions with chain D,- Hydrophobic interactions: D:F.97, D:F.97, D:A.127, D:V.157, D:Y.162, D:F.167, D:F.167, D:I.177, D:F.180, D:F.180
- pi-Stacking: D:H.173, D:H.173
- Metal complexes: D:H.173
BCL.15: 23 residues within 4Å:- Chain D: Y.162, F.181
- Chain E: A.153, L.156, W.157, L.160, T.186, N.187, F.189, S.190, F.197, F.201, H.202, S.205, I.206, L.209, Y.210, G.280, I.284
- Ligands: BCL.13, BCL.14, BCL.16, BPH.17
13 PLIP interactions:13 interactions with chain E,- Hydrophobic interactions: E:A.153, E:W.157, E:T.186, E:F.189, E:F.197, E:F.197, E:I.206, E:L.209, E:Y.210
- pi-Stacking: E:H.202, E:H.202
- pi-Cation interactions: E:H.202
- Metal complexes: E:H.202
BCL.16: 14 residues within 4Å:- Chain D: Y.128, F.146, H.153, L.154
- Chain E: F.197, H.202, G.203, I.206, A.207, Y.210, G.211
- Ligands: BCL.14, BCL.15, BPH.18
8 PLIP interactions:3 interactions with chain E, 5 interactions with chain D,- Hydrophobic interactions: E:F.197, E:I.206, E:A.207, D:Y.128, D:F.146, D:L.154
- pi-Stacking: D:H.153, D:H.153
- 4 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
BPH.7: 21 residues within 4Å:- Chain A: F.181, T.182, A.184, L.185, A.188, L.189, L.219
- Chain B: L.60, G.63, L.64, A.125, V.126, W.129, A.149, F.150, A.273, V.274, T.277
- Ligands: BCL.3, BCL.5, U10.10
9 PLIP interactions:6 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:L.60, B:L.64, B:F.150, B:F.150, B:T.277, A:F.181, A:A.184, A:L.189
- pi-Stacking: B:F.150
BPH.8: 26 residues within 4Å:- Chain A: A.42, I.46, A.93, F.97, W.100, E.104, I.117, A.120, F.121, A.124, Y.148, G.149, I.150, H.153, L.238, V.241
- Chain B: Y.210, A.213, L.214, A.217, M.218, W.252, M.256
- Ligands: BCL.4, BCL.6, U10.9
12 PLIP interactions:10 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:A.42, A:I.46, A:A.93, A:A.120, A:A.124, A:Y.148, A:I.150, A:L.238, A:V.241, B:Y.210, B:A.213
- pi-Stacking: A:F.121
BPH.17: 21 residues within 4Å:- Chain D: F.181, T.182, A.184, L.185, A.188, L.189, L.219
- Chain E: L.60, G.63, L.64, A.125, V.126, W.129, A.149, F.150, A.273, V.274, T.277
- Ligands: BCL.13, BCL.15, U10.20
9 PLIP interactions:3 interactions with chain D, 6 interactions with chain E- Hydrophobic interactions: D:F.181, D:A.184, D:L.189, E:L.60, E:L.64, E:F.150, E:F.150, E:T.277
- pi-Stacking: E:F.150
BPH.18: 26 residues within 4Å:- Chain D: A.42, I.46, A.93, F.97, W.100, E.104, I.117, A.120, F.121, A.124, Y.148, G.149, I.150, H.153, L.238, V.241
- Chain E: Y.210, A.213, L.214, A.217, M.218, W.252, M.256
- Ligands: BCL.14, BCL.16, U10.19
12 PLIP interactions:10 interactions with chain D, 2 interactions with chain E- Hydrophobic interactions: D:A.42, D:I.46, D:A.93, D:A.120, D:A.124, D:Y.148, D:I.150, D:L.238, D:V.241, E:Y.210, E:A.213
- pi-Stacking: D:F.121
- 4 x U10: UBIQUINONE-10(Non-covalent)
U10.9: 15 residues within 4Å:- Chain A: T.38
- Chain B: L.215, M.218, H.219, T.222, A.248, A.249, W.252, M.256, N.259, A.260, T.261, I.265, W.268
- Ligands: BPH.8
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:L.215, B:M.218, B:W.252, B:A.260, B:I.265, B:W.268
- Hydrogen bonds: B:A.260
U10.10: 11 residues within 4Å:- Chain A: L.193, F.216, V.220, Y.222, S.223, I.224, G.225, I.229, L.232
- Ligands: BCL.3, BPH.7
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:V.220
U10.19: 15 residues within 4Å:- Chain D: T.38
- Chain E: L.215, M.218, H.219, T.222, A.248, A.249, W.252, M.256, N.259, A.260, T.261, I.265, W.268
- Ligands: BPH.18
9 PLIP interactions:9 interactions with chain E- Hydrophobic interactions: E:L.215, E:M.218, E:W.252, E:A.260, E:I.265, E:W.268
- Hydrogen bonds: E:H.219, E:T.222, E:A.260
U10.20: 11 residues within 4Å:- Chain D: L.193, F.216, V.220, Y.222, S.223, I.224, G.225, I.229, L.232
- Ligands: BCL.13, BPH.17
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:V.220
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Uyeda, G. et al., Design of a Redox-Linked Active Metal Site: Manganese Bound to Bacterial Reaction Centers at a Site Resembling That of Photosystem II. Biochemistry (2005)
- Release Date
- 2005-06-07
- Peptides
- Reaction center protein L chain: AD
Reaction center protein M chain: BE
Reaction center protein H chain: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
AB
BE
BC
CF
C - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 1z9k.2 (1 other biounit)
Photosynthetic Reaction Center from Rhodobacter sphaeroides
Reaction center protein L chain
Toggle Identical (AD)Reaction center protein M chain
Toggle Identical (BE)Reaction center protein H chain
Toggle Identical (CF)Related Entries With Identical Sequence
1aig.1 | 1aig.2 | 1aij.1 | 1aij.2 | 1ds8.1 | 1ds8.2 | 1dv3.1 | 1dv3.2 | 1dv6.1 | 1dv6.2 | 1e14.1 | 1e6d.1 | 1f6n.1 | 1fnp.1 | 1fnq.1 | 1jgw.1 | 1jgx.1 | 1jgy.1 | 1jgz.1 | 1jh0.1 | 1k6l.1 | 1k6n.1 | 1kby.1 | 1l9b.1 | 1l9j.1 | 1l9j.2 | 1m3x.1 | 1mps.1 | 1ogv.1 | 1pcr.1 more...less...1qov.1 | 1rg5.1 | 1rgn.1 | 1rqk.1 | 1ry5.1 | 1rzh.1 | 1rzz.1 | 1rzz.2 | 1s00.1 | 1s00.2 | 1umx.1 | 1yf6.1 | 1yst.1 | 1z9j.1 | 1z9k.1 | 2bnp.1 | 2bns.1 | 2boz.1 | 2gmr.1 | 2gnu.1 | 2hg3.1 | 2hg9.1 | 2hh1.1 | 2hhk.1 | 2hit.1 | 2hj6.1 | 2j8c.1 | 2j8d.1 | 2jiy.1 | 2jj0.1 | 2rcr.1 | 2uws.1 | 2uwt.1 | 2uwu.1 | 2uwv.1 | 2uww.1 | 2ux3.1 | 2ux4.1 | 2ux5.1 | 2uxj.1 | 2uxk.1 | 2uxl.1 | 2uxm.1 | 2wx5.1 | 3dsy.1 | 3dta.1 | 3dtr.1 | 3dts.1 | 3du2.1 | 3du3.1 | 3duq.1 | 3i4d.1 | 3zum.1 | 3zuw.1 | 4h99.1 | 4h9l.1 | 4hbh.1 | 4hbj.1 | 4in6.1 | 4lwy.1 | 4n7k.1 | 4n7l.1 | 4rcr.1 | 4tqq.1 | 4v9g.30 | 4v9g.62 | 5lri.1 | 5lse.1 | 7pil.1 | 7pqd.30 | 7pqd.31 | 7pqd.65 | 7pqd.66 | 7va9.3 | 7va9.35 | 7vb9.1 | 7vnm.1 | 7vor.3 | 7vor.36 | 7vot.3 | 7vot.36 | 7voy.1