SMTL ID : 1ze3.1

Crystal Structure of the Ternary Complex of FIMD (N-Terminal Domain) with FIMC and the Pilin Domain of FIMH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

hetero-1-1-1-mer

Ligands

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: A.6, T.7, R.8, D.192, Y.193, G.194 Chain B: T.1 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:T.7, A:R.8, A:R.8, B:T.1 Water bridges: B:T.1 EDO.2: 7 residues within 4Å: Chain A: P.124, Y.148, Y.149, L.150, I.190, D.192 Ligands: EDO.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.149 Water bridges: A:R.116, A:R.116, A:A.128 EDO.3: 5 residues within 4Å: Chain A: K.119, L.120, L.122, P.123, Y.148 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.122 EDO.4: 6 residues within 4Å: Chain A: P.124, D.125, N.191, D.192, Y.193 Ligands: EDO.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.192, A:D.192 EDO.5: 8 residues within 4Å: Chain A: V.2, A.3, L.4, V.87, A.89, I.107, S.109 Ligands: EDO.10 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.107, A:S.109 Water bridges: A:V.2, A:V.2, A:L.4 EDO.6: 3 residues within 4Å: Chain A: M.204, E.205 Ligands: EDO.7 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.205, A:E.205 EDO.7: 2 residues within 4Å: Chain A: R.132 Ligands: EDO.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.132 EDO.8: 3 residues within 4Å: Chain A: Q.17, E.18, Q.19 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.17, A:Q.19, A:Q.19 Water bridges: A:E.18, A:Q.19 EDO.9: 7 residues within 4Å: Chain A: A.3 Chain B: G.3, C.4, D.5, Y.29, C.30, A.31 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:C.4, B:A.31 Water bridges: B:G.2 EDO.10: 8 residues within 4Å: Chain A: V.2, I.107, S.109 Chain B: C.4, V.6, F.119, Y.121 Ligands: EDO.5 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:V.2, B:Y.121 Water bridges: A:S.109, A:S.109, B:D.5 EDO.11: 4 residues within 4Å: Chain A: N.28, S.29 Chain B: R.9, D.10 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.28, B:R.9 EDO.12: 3 residues within 4Å: Chain C: T.32, R.47, T.50 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.47 Water bridges: C:Q.68, C:Q.68, C:Q.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nishiyama, M. et al., Structural basis of chaperone-subunit complex recognition by the type 1 pilus assembly platform FimD. Embo J. (2005)

Release Date

2005-06-14

Peptides

Chaperone protein fimC: A
FimH protein: B
Outer membrane usher protein fimD: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
H

C
D

Chaperone protein fimC

FimH protein

Outer membrane usher protein fimD

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