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SMTL ID : 1zin.1
ADENYLATE KINASE WITH BOUND AP5A
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.60 Å
Oligo State
monomer
Ligands
1 x
ZN
:
ZINC ION
(Non-covalent)
ZN.1:
4 residues within 4Å:
Chain A:
C.130
,
C.133
,
C.150
,
C.153
4
PLIP interactions
:
4 interactions with chain A
Metal complexes:
A:C.130
,
A:C.133
,
A:C.150
,
A:C.153
1 x
AP5
:
BIS(ADENOSINE)-5'-PENTAPHOSPHATE
(Non-covalent)
AP5.2:
32 residues within 4Å:
Chain A:
P.9
,
G.10
,
A.11
,
G.12
,
K.13
,
G.14
,
T.15
,
T.31
,
G.32
,
F.35
,
R.36
,
M.53
,
D.57
,
L.58
,
V.59
,
T.64
,
G.85
,
F.86
,
R.88
,
Q.92
,
R.123
,
L.124
,
R.127
,
T.136
,
Y.137
,
H.138
,
F.141
,
H.142
,
R.160
,
R.171
,
Q.199
,
M.201
47
PLIP interactions
:
47 interactions with chain A
Hydrogen bonds:
A:G.10
,
A:G.12
,
A:K.13
,
A:G.14
,
A:T.15
,
A:T.15
,
A:T.31
,
A:G.32
,
A:D.57
,
A:V.59
,
A:T.64
,
A:Q.92
,
A:Q.92
,
A:R.123
,
A:Q.199
Water bridges:
A:T.15
,
A:R.88
,
A:R.88
,
A:R.88
,
A:R.88
,
A:R.88
,
A:R.123
,
A:R.123
,
A:R.127
,
A:R.127
,
A:T.136
,
A:T.136
,
A:T.136
,
A:T.136
,
A:H.142
,
A:R.171
Salt bridges:
A:K.13
,
A:K.13
,
A:K.13
,
A:R.36
,
A:R.88
,
A:R.88
,
A:R.127
,
A:R.127
,
A:R.127
,
A:R.160
,
A:R.160
,
A:R.171
,
A:R.171
pi-Stacking:
A:F.35
pi-Cation interactions:
A:R.88
,
A:R.123
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Berry, M.B. et al., Crystal structures of Bacillus stearothermophilus adenylate kinase with bound Ap5A, Mg2+ Ap5A, and Mn2+ Ap5A reveal an intermediate lid position and six coordinate octahedral geometry for bound Mg2+ and Mn2+. Proteins (1998)
Release Date
1997-06-16
Peptides
ADENYLATE KINASE:
A
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
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ADENYLATE KINASE
Related Entries With Identical Sequence
1zio.1
|
1zip.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
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