SMTL ID : 1zis.3 (3 other biounits)

Recombinant Lumazine synthase (hexagonal form)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-60-mer

Ligands

60 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: G.84, A.85, T.86, H.88 Chain E: R.127 Ligand excluded by PLIP PO4.3: 4 residues within 4Å: Chain A: R.127 Chain B: G.84, A.85, T.86 Ligand excluded by PLIP PO4.5: 5 residues within 4Å: Chain B: R.127 Chain C: G.84, A.85, T.86, H.88 Ligand excluded by PLIP PO4.7: 4 residues within 4Å: Chain C: R.127 Chain D: G.84, A.85, T.86 Ligand excluded by PLIP PO4.9: 4 residues within 4Å: Chain D: R.127 Chain E: G.84, A.85, T.86 Ligand excluded by PLIP PO4.11: 5 residues within 4Å: Chain F: G.84, A.85, T.86, H.88 Chain J: R.127 Ligand excluded by PLIP PO4.13: 4 residues within 4Å: Chain F: R.127 Chain G: G.84, A.85, T.86 Ligand excluded by PLIP PO4.15: 5 residues within 4Å: Chain G: R.127 Chain H: G.84, A.85, T.86, H.88 Ligand excluded by PLIP PO4.17: 4 residues within 4Å: Chain H: R.127 Chain I: G.84, A.85, T.86 Ligand excluded by PLIP PO4.19: 4 residues within 4Å: Chain I: R.127 Chain J: G.84, A.85, T.86 Ligand excluded by PLIP PO4.21: 5 residues within 4Å: Chain K: G.84, A.85, T.86, H.88 Chain O: R.127 Ligand excluded by PLIP PO4.23: 4 residues within 4Å: Chain K: R.127 Chain L: G.84, A.85, T.86 Ligand excluded by PLIP PO4.25: 5 residues within 4Å: Chain L: R.127 Chain M: G.84, A.85, T.86, H.88 Ligand excluded by PLIP PO4.27: 4 residues within 4Å: Chain M: R.127 Chain N: G.84, A.85, T.86 Ligand excluded by PLIP PO4.29: 4 residues within 4Å: Chain N: R.127 Chain O: G.84, A.85, T.86 Ligand excluded by PLIP PO4.31: 5 residues within 4Å: Chain P: G.84, A.85, T.86, H.88 Chain T: R.127 Ligand excluded by PLIP PO4.33: 4 residues within 4Å: Chain P: R.127 Chain Q: G.84, A.85, T.86 Ligand excluded by PLIP PO4.35: 5 residues within 4Å: Chain Q: R.127 Chain R: G.84, A.85, T.86, H.88 Ligand excluded by PLIP PO4.37: 4 residues within 4Å: Chain R: R.127 Chain S: G.84, A.85, T.86 Ligand excluded by PLIP PO4.39: 4 residues within 4Å: Chain S: R.127 Chain T: G.84, A.85, T.86 Ligand excluded by PLIP PO4.41: 5 residues within 4Å: Chain U: G.84, A.85, T.86, H.88 Chain Y: R.127 Ligand excluded by PLIP PO4.43: 4 residues within 4Å: Chain U: R.127 Chain V: G.84, A.85, T.86 Ligand excluded by PLIP PO4.45: 5 residues within 4Å: Chain V: R.127 Chain W: G.84, A.85, T.86, H.88 Ligand excluded by PLIP PO4.47: 4 residues within 4Å: Chain W: R.127 Chain X: G.84, A.85, T.86 Ligand excluded by PLIP PO4.49: 4 residues within 4Å: Chain X: R.127 Chain Y: G.84, A.85, T.86 Ligand excluded by PLIP PO4.51: 5 residues within 4Å: Chain 3: R.127 Chain Z: G.84, A.85, T.86, H.88 Ligand excluded by PLIP PO4.53: 4 residues within 4Å: Chain 0: G.84, A.85, T.86 Chain Z: R.127 Ligand excluded by PLIP PO4.55: 5 residues within 4Å: Chain 0: R.127 Chain 1: G.84, A.85, T.86, H.88 Ligand excluded by PLIP PO4.57: 4 residues within 4Å: Chain 1: R.127 Chain 2: G.84, A.85, T.86 Ligand excluded by PLIP PO4.59: 4 residues within 4Å: Chain 2: R.127 Chain 3: G.84, A.85, T.86 Ligand excluded by PLIP PO4.61: 5 residues within 4Å: Chain 4: G.84, A.85, T.86, H.88 Chain 8: R.127 Ligand excluded by PLIP PO4.63: 5 residues within 4Å: Chain 4: R.127 Chain 5: G.84, A.85, T.86, H.88 Ligand excluded by PLIP PO4.65: 5 residues within 4Å: Chain 5: R.127 Chain 6: G.84, A.85, T.86, H.88 Ligand excluded by PLIP PO4.67: 4 residues within 4Å: Chain 6: R.127 Chain 7: G.84, A.85, T.86 Ligand excluded by PLIP PO4.68: 5 residues within 4Å: Chain 7: R.127 Chain 8: G.84, A.85, T.86, H.88 Ligand excluded by PLIP PO4.71: 5 residues within 4Å: Chain 9: G.84, A.85, T.86, H.88 Chain d: R.127 Ligand excluded by PLIP PO4.73: 5 residues within 4Å: Chain 9: R.127 Chain a: G.84, A.85, T.86, H.88 Ligand excluded by PLIP PO4.75: 5 residues within 4Å: Chain a: R.127 Chain b: G.84, A.85, T.86, H.88 Ligand excluded by PLIP PO4.77: 4 residues within 4Å: Chain b: R.127 Chain c: G.84, A.85, T.86 Ligand excluded by PLIP PO4.78: 5 residues within 4Å: Chain c: R.127 Chain d: G.84, A.85, T.86, H.88 Ligand excluded by PLIP PO4.81: 5 residues within 4Å: Chain e: G.84, A.85, T.86, H.88 Chain i: R.127 Ligand excluded by PLIP PO4.83: 5 residues within 4Å: Chain e: R.127 Chain f: G.84, A.85, T.86, H.88 Ligand excluded by PLIP PO4.85: 5 residues within 4Å: Chain f: R.127 Chain g: G.84, A.85, T.86, H.88 Ligand excluded by PLIP PO4.87: 4 residues within 4Å: Chain g: R.127 Chain h: G.84, A.85, T.86 Ligand excluded by PLIP PO4.88: 5 residues within 4Å: Chain h: R.127 Chain i: G.84, A.85, T.86, H.88 Ligand excluded by PLIP PO4.91: 5 residues within 4Å: Chain j: G.84, A.85, T.86, H.88 Chain n: R.127 Ligand excluded by PLIP PO4.93: 5 residues within 4Å: Chain j: R.127 Chain k: G.84, A.85, T.86, H.88 Ligand excluded by PLIP PO4.95: 5 residues within 4Å: Chain k: R.127 Chain l: G.84, A.85, T.86, H.88 Ligand excluded by PLIP PO4.97: 4 residues within 4Å: Chain l: R.127 Chain m: G.84, A.85, T.86 Ligand excluded by PLIP PO4.98: 5 residues within 4Å: Chain m: R.127 Chain n: G.84, A.85, T.86, H.88 Ligand excluded by PLIP PO4.101: 5 residues within 4Å: Chain o: G.84, A.85, T.86, H.88 Chain s: R.127 Ligand excluded by PLIP PO4.103: 5 residues within 4Å: Chain o: R.127 Chain p: G.84, A.85, T.86, H.88 Ligand excluded by PLIP PO4.105: 5 residues within 4Å: Chain p: R.127 Chain q: G.84, A.85, T.86, H.88 Ligand excluded by PLIP PO4.107: 4 residues within 4Å: Chain q: R.127 Chain r: G.84, A.85, T.86 Ligand excluded by PLIP PO4.108: 5 residues within 4Å: Chain r: R.127 Chain s: G.84, A.85, T.86, H.88 Ligand excluded by PLIP PO4.111: 5 residues within 4Å: Chain t: G.84, A.85, T.86, H.88 Chain x: R.127 Ligand excluded by PLIP PO4.113: 5 residues within 4Å: Chain t: R.127 Chain u: G.84, A.85, T.86, H.88 Ligand excluded by PLIP PO4.115: 5 residues within 4Å: Chain u: R.127 Chain v: G.84, A.85, T.86, H.88 Ligand excluded by PLIP PO4.117: 4 residues within 4Å: Chain v: R.127 Chain w: G.84, A.85, T.86 Ligand excluded by PLIP PO4.118: 5 residues within 4Å: Chain w: R.127 Chain x: G.84, A.85, T.86, H.88 Ligand excluded by PLIP

60 x INI: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)-PYRIMIDINEDIONE(Non-covalent)

INI.2: 15 residues within 4Å: Chain A: F.22, N.23, P.54, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 Chain E: I.112, F.113, K.135 9 PLIP interactions: 7 interactions with chain A, 2 interactions with chain E Hydrogen bonds: A:N.23, A:A.56, A:F.57, A:T.80, A:I.82, A:I.82, E:F.113, E:K.135 pi-Stacking: A:F.22 INI.4: 14 residues within 4Å: Chain A: I.112, F.113, K.135 Chain B: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:N.23, B:A.56, B:F.57, B:T.80, B:I.82, A:F.113, A:K.135 pi-Stacking: B:F.22 INI.6: 14 residues within 4Å: Chain B: I.112, F.113, K.135 Chain C: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 9 PLIP interactions: 7 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:N.23, C:A.56, C:F.57, C:T.80, C:I.82, C:I.82, B:F.113, B:K.135 pi-Stacking: C:F.22 INI.8: 14 residues within 4Å: Chain C: I.112, F.113, K.135 Chain D: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:N.23, D:A.56, D:F.57, D:T.80, D:I.82, C:F.113, C:K.135 pi-Stacking: D:F.22 INI.10: 14 residues within 4Å: Chain D: I.112, F.113, K.135 Chain E: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain E, 2 interactions with chain D Hydrogen bonds: E:N.23, E:A.56, E:F.57, E:T.80, E:I.82, D:F.113, D:K.135 pi-Stacking: E:F.22 INI.12: 15 residues within 4Å: Chain F: F.22, N.23, P.54, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 Chain J: I.112, F.113, K.135 9 PLIP interactions: 7 interactions with chain F, 2 interactions with chain J Hydrogen bonds: F:N.23, F:A.56, F:F.57, F:T.80, F:I.82, F:I.82, J:F.113, J:K.135 pi-Stacking: F:F.22 INI.14: 14 residues within 4Å: Chain F: I.112, F.113, K.135 Chain G: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain G, 2 interactions with chain F Hydrogen bonds: G:N.23, G:A.56, G:F.57, G:T.80, G:I.82, F:F.113, F:K.135 pi-Stacking: G:F.22 INI.16: 14 residues within 4Å: Chain G: I.112, F.113, K.135 Chain H: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 9 PLIP interactions: 7 interactions with chain H, 2 interactions with chain G Hydrogen bonds: H:N.23, H:A.56, H:F.57, H:T.80, H:I.82, H:I.82, G:F.113, G:K.135 pi-Stacking: H:F.22 INI.18: 14 residues within 4Å: Chain H: I.112, F.113, K.135 Chain I: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 2 interactions with chain H, 6 interactions with chain I Hydrogen bonds: H:F.113, H:K.135, I:N.23, I:A.56, I:F.57, I:T.80, I:I.82 pi-Stacking: I:F.22 INI.20: 14 residues within 4Å: Chain I: I.112, F.113, K.135 Chain J: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain J, 2 interactions with chain I Hydrogen bonds: J:N.23, J:A.56, J:F.57, J:T.80, J:I.82, I:F.113, I:K.135 pi-Stacking: J:F.22 INI.22: 15 residues within 4Å: Chain K: F.22, N.23, P.54, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 Chain O: I.112, F.113, K.135 9 PLIP interactions: 7 interactions with chain K, 2 interactions with chain O Hydrogen bonds: K:N.23, K:A.56, K:F.57, K:T.80, K:I.82, K:I.82, O:F.113, O:K.135 pi-Stacking: K:F.22 INI.24: 14 residues within 4Å: Chain K: I.112, F.113, K.135 Chain L: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 2 interactions with chain K, 6 interactions with chain L Hydrogen bonds: K:F.113, K:K.135, L:N.23, L:A.56, L:F.57, L:T.80, L:I.82 pi-Stacking: L:F.22 INI.26: 14 residues within 4Å: Chain L: I.112, F.113, K.135 Chain M: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 9 PLIP interactions: 7 interactions with chain M, 2 interactions with chain L Hydrogen bonds: M:N.23, M:A.56, M:F.57, M:T.80, M:I.82, M:I.82, L:F.113, L:K.135 pi-Stacking: M:F.22 INI.28: 14 residues within 4Å: Chain M: I.112, F.113, K.135 Chain N: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 2 interactions with chain M, 6 interactions with chain N Hydrogen bonds: M:F.113, M:K.135, N:N.23, N:A.56, N:F.57, N:T.80, N:I.82 pi-Stacking: N:F.22 INI.30: 14 residues within 4Å: Chain N: I.112, F.113, K.135 Chain O: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 2 interactions with chain N, 6 interactions with chain O Hydrogen bonds: N:F.113, N:K.135, O:N.23, O:A.56, O:F.57, O:T.80, O:I.82 pi-Stacking: O:F.22 INI.32: 15 residues within 4Å: Chain P: F.22, N.23, P.54, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 Chain T: I.112, F.113, K.135 9 PLIP interactions: 2 interactions with chain T, 7 interactions with chain P Hydrogen bonds: T:F.113, T:K.135, P:N.23, P:A.56, P:F.57, P:T.80, P:I.82, P:I.82 pi-Stacking: P:F.22 INI.34: 14 residues within 4Å: Chain P: I.112, F.113, K.135 Chain Q: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain Q, 2 interactions with chain P Hydrogen bonds: Q:N.23, Q:A.56, Q:F.57, Q:T.80, Q:I.82, P:F.113, P:K.135 pi-Stacking: Q:F.22 INI.36: 14 residues within 4Å: Chain Q: I.112, F.113, K.135 Chain R: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 9 PLIP interactions: 7 interactions with chain R, 2 interactions with chain Q Hydrogen bonds: R:N.23, R:A.56, R:F.57, R:T.80, R:I.82, R:I.82, Q:F.113, Q:K.135 pi-Stacking: R:F.22 INI.38: 14 residues within 4Å: Chain R: I.112, F.113, K.135 Chain S: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain S, 2 interactions with chain R Hydrogen bonds: S:N.23, S:A.56, S:F.57, S:T.80, S:I.82, R:F.113, R:K.135 pi-Stacking: S:F.22 INI.40: 14 residues within 4Å: Chain S: I.112, F.113, K.135 Chain T: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 2 interactions with chain S, 6 interactions with chain T Hydrogen bonds: S:F.113, S:K.135, T:N.23, T:A.56, T:F.57, T:T.80, T:I.82 pi-Stacking: T:F.22 INI.42: 15 residues within 4Å: Chain U: F.22, N.23, P.54, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 Chain Y: I.112, F.113, K.135 9 PLIP interactions: 7 interactions with chain U, 2 interactions with chain Y Hydrogen bonds: U:N.23, U:A.56, U:F.57, U:T.80, U:I.82, U:I.82, Y:F.113, Y:K.135 pi-Stacking: U:F.22 INI.44: 14 residues within 4Å: Chain U: I.112, F.113, K.135 Chain V: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain V, 2 interactions with chain U Hydrogen bonds: V:N.23, V:A.56, V:F.57, V:T.80, V:I.82, U:F.113, U:K.135 pi-Stacking: V:F.22 INI.46: 14 residues within 4Å: Chain V: I.112, F.113, K.135 Chain W: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 9 PLIP interactions: 7 interactions with chain W, 2 interactions with chain V Hydrogen bonds: W:N.23, W:A.56, W:F.57, W:T.80, W:I.82, W:I.82, V:F.113, V:K.135 pi-Stacking: W:F.22 INI.48: 14 residues within 4Å: Chain W: I.112, F.113, K.135 Chain X: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain X, 2 interactions with chain W Hydrogen bonds: X:N.23, X:A.56, X:F.57, X:T.80, X:I.82, W:F.113, W:K.135 pi-Stacking: X:F.22 INI.50: 14 residues within 4Å: Chain X: I.112, F.113, K.135 Chain Y: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain Y, 2 interactions with chain X Hydrogen bonds: Y:N.23, Y:A.56, Y:F.57, Y:T.80, Y:I.82, X:F.113, X:K.135 pi-Stacking: Y:F.22 INI.52: 15 residues within 4Å: Chain 3: I.112, F.113, K.135 Chain Z: F.22, N.23, P.54, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 9 PLIP interactions: 7 interactions with chain Z, 2 interactions with chain 3 Hydrogen bonds: Z:N.23, Z:A.56, Z:F.57, Z:T.80, Z:I.82, Z:I.82, 3:F.113, 3:K.135 pi-Stacking: Z:F.22 INI.54: 14 residues within 4Å: Chain 0: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 Chain Z: I.112, F.113, K.135 8 PLIP interactions: 2 interactions with chain Z, 6 interactions with chain 0 Hydrogen bonds: Z:F.113, Z:K.135, 0:N.23, 0:A.56, 0:F.57, 0:T.80, 0:I.82 pi-Stacking: 0:F.22 INI.56: 14 residues within 4Å: Chain 0: I.112, F.113, K.135 Chain 1: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 9 PLIP interactions: 7 interactions with chain 1, 2 interactions with chain 0 Hydrogen bonds: 1:N.23, 1:A.56, 1:F.57, 1:T.80, 1:I.82, 1:I.82, 0:F.113, 0:K.135 pi-Stacking: 1:F.22 INI.58: 14 residues within 4Å: Chain 1: I.112, F.113, K.135 Chain 2: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain 2, 2 interactions with chain 1 Hydrogen bonds: 2:N.23, 2:A.56, 2:F.57, 2:T.80, 2:I.82, 1:F.113, 1:K.135 pi-Stacking: 2:F.22 INI.60: 14 residues within 4Å: Chain 2: I.112, F.113, K.135 Chain 3: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain 3, 2 interactions with chain 2 Hydrogen bonds: 3:N.23, 3:A.56, 3:F.57, 3:T.80, 3:I.82, 2:F.113, 2:K.135 pi-Stacking: 3:F.22 INI.62: 14 residues within 4Å: Chain 4: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 Chain 8: I.112, F.113, K.135 8 PLIP interactions: 6 interactions with chain 4, 2 interactions with chain 8 Hydrogen bonds: 4:N.23, 4:A.56, 4:F.57, 4:T.80, 4:I.82, 8:F.113, 8:K.135 pi-Stacking: 4:F.22 INI.64: 14 residues within 4Å: Chain 4: I.112, F.113, K.135 Chain 5: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain 5, 2 interactions with chain 4 Hydrogen bonds: 5:N.23, 5:A.56, 5:F.57, 5:T.80, 5:I.82, 4:F.113, 4:K.135 pi-Stacking: 5:F.22 INI.66: 14 residues within 4Å: Chain 5: I.112, F.113, K.135 Chain 6: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 9 PLIP interactions: 7 interactions with chain 6, 2 interactions with chain 5 Hydrogen bonds: 6:N.23, 6:A.56, 6:F.57, 6:T.80, 6:I.82, 6:I.82, 5:F.113, 5:K.135 pi-Stacking: 6:F.22 INI.69: 14 residues within 4Å: Chain 6: I.112, F.113, K.135 Chain 7: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain 7, 2 interactions with chain 6 Hydrogen bonds: 7:N.23, 7:A.56, 7:F.57, 7:T.80, 7:I.82, 6:F.113, 6:K.135 pi-Stacking: 7:F.22 INI.70: 14 residues within 4Å: Chain 7: I.112, F.113, K.135 Chain 8: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 2 interactions with chain 7, 6 interactions with chain 8 Hydrogen bonds: 7:F.113, 7:K.135, 8:N.23, 8:A.56, 8:F.57, 8:T.80, 8:I.82 pi-Stacking: 8:F.22 INI.72: 14 residues within 4Å: Chain 9: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 Chain d: I.112, F.113, K.135 8 PLIP interactions: 2 interactions with chain d, 6 interactions with chain 9 Hydrogen bonds: d:F.113, d:K.135, 9:N.23, 9:A.56, 9:F.57, 9:T.80, 9:I.82 pi-Stacking: 9:F.22 INI.74: 14 residues within 4Å: Chain 9: I.112, F.113, K.135 Chain a: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain a, 2 interactions with chain 9 Hydrogen bonds: a:N.23, a:A.56, a:F.57, a:T.80, a:I.82, 9:F.113, 9:K.135 pi-Stacking: a:F.22 INI.76: 14 residues within 4Å: Chain a: I.112, F.113, K.135 Chain b: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 9 PLIP interactions: 7 interactions with chain b, 2 interactions with chain a Hydrogen bonds: b:N.23, b:A.56, b:F.57, b:T.80, b:I.82, b:I.82, a:F.113, a:K.135 pi-Stacking: b:F.22 INI.79: 14 residues within 4Å: Chain b: I.112, F.113, K.135 Chain c: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain c, 2 interactions with chain b Hydrogen bonds: c:N.23, c:A.56, c:F.57, c:T.80, c:I.82, b:F.113, b:K.135 pi-Stacking: c:F.22 INI.80: 14 residues within 4Å: Chain c: I.112, F.113, K.135 Chain d: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain d, 2 interactions with chain c Hydrogen bonds: d:N.23, d:A.56, d:F.57, d:T.80, d:I.82, c:F.113, c:K.135 pi-Stacking: d:F.22 INI.82: 14 residues within 4Å: Chain e: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 Chain i: I.112, F.113, K.135 8 PLIP interactions: 6 interactions with chain e, 2 interactions with chain i Hydrogen bonds: e:N.23, e:A.56, e:F.57, e:T.80, e:I.82, i:F.113, i:K.135 pi-Stacking: e:F.22 INI.84: 14 residues within 4Å: Chain e: I.112, F.113, K.135 Chain f: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain f, 2 interactions with chain e Hydrogen bonds: f:N.23, f:A.56, f:F.57, f:T.80, f:I.82, e:F.113, e:K.135 pi-Stacking: f:F.22 INI.86: 14 residues within 4Å: Chain f: I.112, F.113, K.135 Chain g: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 9 PLIP interactions: 7 interactions with chain g, 2 interactions with chain f Hydrogen bonds: g:N.23, g:A.56, g:F.57, g:T.80, g:I.82, g:I.82, f:F.113, f:K.135 pi-Stacking: g:F.22 INI.89: 14 residues within 4Å: Chain g: I.112, F.113, K.135 Chain h: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain h, 2 interactions with chain g Hydrogen bonds: h:N.23, h:A.56, h:F.57, h:T.80, h:I.82, g:F.113, g:K.135 pi-Stacking: h:F.22 INI.90: 14 residues within 4Å: Chain h: I.112, F.113, K.135 Chain i: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain i, 2 interactions with chain h Hydrogen bonds: i:N.23, i:A.56, i:F.57, i:T.80, i:I.82, h:F.113, h:K.135 pi-Stacking: i:F.22 INI.92: 14 residues within 4Å: Chain j: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 Chain n: I.112, F.113, K.135 8 PLIP interactions: 6 interactions with chain j, 2 interactions with chain n Hydrogen bonds: j:N.23, j:A.56, j:F.57, j:T.80, j:I.82, n:F.113, n:K.135 pi-Stacking: j:F.22 INI.94: 14 residues within 4Å: Chain j: I.112, F.113, K.135 Chain k: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain k, 2 interactions with chain j Hydrogen bonds: k:N.23, k:A.56, k:F.57, k:T.80, k:I.82, j:F.113, j:K.135 pi-Stacking: k:F.22 INI.96: 14 residues within 4Å: Chain k: I.112, F.113, K.135 Chain l: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 9 PLIP interactions: 2 interactions with chain k, 7 interactions with chain l Hydrogen bonds: k:F.113, k:K.135, l:N.23, l:A.56, l:F.57, l:T.80, l:I.82, l:I.82 pi-Stacking: l:F.22 INI.99: 14 residues within 4Å: Chain l: I.112, F.113, K.135 Chain m: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain m, 2 interactions with chain l Hydrogen bonds: m:N.23, m:A.56, m:F.57, m:T.80, m:I.82, l:F.113, l:K.135 pi-Stacking: m:F.22 INI.100: 14 residues within 4Å: Chain m: I.112, F.113, K.135 Chain n: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 2 interactions with chain m, 6 interactions with chain n Hydrogen bonds: m:F.113, m:K.135, n:N.23, n:A.56, n:F.57, n:T.80, n:I.82 pi-Stacking: n:F.22 INI.102: 14 residues within 4Å: Chain o: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 Chain s: I.112, F.113, K.135 8 PLIP interactions: 6 interactions with chain o, 2 interactions with chain s Hydrogen bonds: o:N.23, o:A.56, o:F.57, o:T.80, o:I.82, s:F.113, s:K.135 pi-Stacking: o:F.22 INI.104: 14 residues within 4Å: Chain o: I.112, F.113, K.135 Chain p: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 2 interactions with chain o, 6 interactions with chain p Hydrogen bonds: o:F.113, o:K.135, p:N.23, p:A.56, p:F.57, p:T.80, p:I.82 pi-Stacking: p:F.22 INI.106: 14 residues within 4Å: Chain p: I.112, F.113, K.135 Chain q: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 9 PLIP interactions: 7 interactions with chain q, 2 interactions with chain p Hydrogen bonds: q:N.23, q:A.56, q:F.57, q:T.80, q:I.82, q:I.82, p:F.113, p:K.135 pi-Stacking: q:F.22 INI.109: 14 residues within 4Å: Chain q: I.112, F.113, K.135 Chain r: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 2 interactions with chain q, 6 interactions with chain r Hydrogen bonds: q:F.113, q:K.135, r:N.23, r:A.56, r:F.57, r:T.80, r:I.82 pi-Stacking: r:F.22 INI.110: 14 residues within 4Å: Chain r: I.112, F.113, K.135 Chain s: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain s, 2 interactions with chain r Hydrogen bonds: s:N.23, s:A.56, s:F.57, s:T.80, s:I.82, r:F.113, r:K.135 pi-Stacking: s:F.22 INI.112: 14 residues within 4Å: Chain t: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 Chain x: I.112, F.113, K.135 8 PLIP interactions: 6 interactions with chain t, 2 interactions with chain x Hydrogen bonds: t:N.23, t:A.56, t:F.57, t:T.80, t:I.82, x:F.113, x:K.135 pi-Stacking: t:F.22 INI.114: 14 residues within 4Å: Chain t: I.112, F.113, K.135 Chain u: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain u, 2 interactions with chain t Hydrogen bonds: u:N.23, u:A.56, u:F.57, u:T.80, u:I.82, t:F.113, t:K.135 pi-Stacking: u:F.22 INI.116: 14 residues within 4Å: Chain u: I.112, F.113, K.135 Chain v: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 9 PLIP interactions: 7 interactions with chain v, 2 interactions with chain u Hydrogen bonds: v:N.23, v:A.56, v:F.57, v:T.80, v:I.82, v:I.82, u:F.113, u:K.135 pi-Stacking: v:F.22 INI.119: 14 residues within 4Å: Chain v: I.112, F.113, K.135 Chain w: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 2 interactions with chain v, 6 interactions with chain w Hydrogen bonds: v:F.113, v:K.135, w:N.23, w:A.56, w:F.57, w:T.80, w:I.82 pi-Stacking: w:F.22 INI.120: 14 residues within 4Å: Chain w: I.112, F.113, K.135 Chain x: F.22, N.23, G.55, A.56, F.57, E.58, T.80, V.81, I.82, H.88, V.92 8 PLIP interactions: 6 interactions with chain x, 2 interactions with chain w Hydrogen bonds: x:N.23, x:A.56, x:F.57, x:T.80, x:I.82, w:F.113, w:K.135 pi-Stacking: x:F.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lopez-Jaramillo, F.J., Crystal structure of recombinant Lumazine synthase (hexagonal form). To be Published

Release Date

2006-10-03

Peptides

6,7-dimethyl-8-ribityllumazine synthase: ABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789abcdefghijklmnopqrstuvwx

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
G

C
H

D
I

E
J

F
F

G
G

H
H

I
I

J
J

K
F

L
G

M
H

N
I

O
J

P
F

Q
G

R
H

S
I

T
J

U
F

V
G

W
H

X
I

Y
J

Z
F

0
G

1
H

2
I

3
J

4
A

5
B

6
C

7
D

8
E

9
A

a
B

b
C

c
D

d
E

e
A

f
B

g
C

h
D

i
E

j
A

k
B

l
C

m
D

n
E

o
A

p
B

q
C

r
D

s
E

t
A

u
B

v
C

w
D

x
E

6,7-dimethyl-8-ribityllumazine synthase

Related Entries With Identical Sequence