SMTL ID : 1zjw.1

Glutaminyl-tRNA synthetase complexed to glutamine and 2'deoxy A76 glutamine tRNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain B: H.40, H.43, R.260, M.268, K.270 Ligands: AMP.3 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.270 Salt bridges: B:H.40, B:H.43, B:R.260, B:K.270 SO4.2: 5 residues within 4Å: Chain B: V.267, M.268, S.269, K.272, G.482 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:M.268, B:S.269, B:G.482 Salt bridges: B:K.272

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.3: 17 residues within 4Å: Chain B: F.31, P.32, P.33, E.34, H.40, G.42, H.43, S.46, L.228, C.229, T.230, R.260, L.261, M.268, K.270 Ligands: SO4.1, GLN.4 12 PLIP interactions: 10 interactions with chain B, 2 Ligand-Ligand interactions Hydrogen bonds: B:E.34, B:E.34, B:S.46, B:R.260, B:L.261, B:L.261, Q.4, Q.4 Water bridges: B:E.34, B:K.270 Salt bridges: B:H.43, B:K.270

1 x GLN: GLUTAMINE(Non-covalent)

GLN.4: 9 residues within 4Å: Chain A: A.75 Chain B: R.30, P.32, D.66, Y.211, H.215, C.229, F.233 Ligands: AMP.3 8 PLIP interactions: 8 interactions with chain B, Hydrophobic interactions: B:Y.211, B:F.233 Hydrogen bonds: B:R.30, B:R.30, B:D.66, B:D.66, B:Y.211, B:Y.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gruic-Sovulj, I. et al., tRNA-dependent Aminoacyl-adenylate Hydrolysis by a Nonediting Class I Aminoacyl-tRNA Synthetase. J.Biol.Chem. (2005)

Release Date

2005-06-07

Peptides

Glutaminyl-tRNA synthetase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

Glutaminyl-tRNA synthetase

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