SMTL ID : 1zo9.1 (1 other biounit)

Crystal Structure Of The Wild Type Heme Domain Of P450BM-3 with N-palmitoylmethionine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: K.72, L.78, L.89, F.90, W.99, F.110, I.156, F.264, A.267, G.268, T.271, T.272, L.275, T.330, A.331, F.334, P.395, F.396, G.397, R.401, A.402, C.403, I.404, G.405, F.408, A.409 23 PLIP interactions: 23 interactions with chain A, Hydrophobic interactions: A:L.89, A:F.90, A:F.90, A:F.90, A:F.110, A:I.156, A:F.264, A:F.264, A:A.267, A:L.275, A:A.331, A:F.396, A:I.404, A:F.408 Water bridges: A:K.72, A:K.72, A:S.335, A:S.335, A:S.335, A:R.401 Salt bridges: A:K.72, A:R.401 Metal complexes: A:C.403

1 x EPM: N-PALMITOYL-L-METHIONINE(Non-covalent)

EPM.2: 16 residues within 4Å: Chain A: L.23, L.32, F.45, Y.54, S.75, Q.76, A.77, V.81, A.85, F.90, L.191, T.263, I.266, P.332, A.333, L.440 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.23, A:V.81, A:A.85, A:F.90, A:T.263 Hydrogen bonds: A:Y.54, A:Q.76, A:A.77

11 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: Q.131, L.458, G.460 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.131, A:L.458, A:L.458 GOL.4: 3 residues within 4Å: Chain A: E.295, A.298, R.299 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.298 GOL.5: 6 residues within 4Å: Chain A: D.37, Q.362, R.365, K.367, V.374, E.375 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.37, A:Q.362, A:R.365, A:E.375, A:E.375 Water bridges: A:K.367 GOL.6: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.24 GOL.7: 4 residues within 4Å: Chain A: I.223, L.241, D.254, I.257 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.254 Water bridges: A:K.227 GOL.8: 6 residues within 4Å: Chain A: K.394, F.396, G.397, N.398, G.399, Q.406 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.394, A:G.399, A:Q.406, A:Q.406 Water bridges: A:H.391, A:F.393, A:F.393, A:G.397, A:N.398 GOL.9: 3 residues within 4Å: Chain A: E.146, P.173, I.177 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.146 Water bridges: A:E.146, A:E.146, A:E.445 GOL.10: 2 residues within 4Å: Chain A: D.124, R.164 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.124, A:R.164, A:R.164 GOL.11: 5 residues within 4Å: Chain A: D.71, T.94, H.95, Y.337, K.339 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.94, A:K.339 Water bridges: A:D.71, A:Q.400, A:Q.400 GOL.12: 4 residues within 4Å: Chain A: Q.58, K.62, I.369, P.389 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.58, A:K.62, A:K.62 GOL.13: 2 residues within 4Å: Chain A: E.134, R.135 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hegde, A. et al., Interactions of substrates at the surface of P450s can greatly enhance substrate potency. Biochemistry (2007)

Release Date

2006-08-01

Peptides

Bifunctional P-450:NADPH-P450 reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bifunctional P-450:NADPH-P450 reductase

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