SMTL ID : 1zp8.1

HIV Protease with inhibitor AB-2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

homo-dimer

Ligands

2 x AB2: [1-((1S,2R)-1-BENZYL-2-HYDROXY-3-{ISOBUTYL[(4-METHOXYPHENYL)SULFONYL]AMINO}PROPYL)-1H-1,2,3-TRIAZOL-4-YL]METHYL (1R,2R)-2-HYDROXY-2,3-DIHYDRO-1H-INDEN-1-YLCARBAMATE(Non-covalent)

AB2.1: 26 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, D.30, I.47, G.48, G.49, I.50, F.53, V.82, I.84 Chain B: D.25, G.27, A.28, D.30, V.32, I.47, G.48, G.49, I.50, T.80, P.81, V.82, I.84 Ligands: AB2.2 21 PLIP interactions: 8 interactions with chain B, 13 interactions with chain A Hydrophobic interactions: B:A.28, B:V.32, B:P.81, B:V.82, B:I.84, A:I.50, A:I.50, A:F.53, A:V.82, A:I.84 Hydrogen bonds: B:D.30, B:D.30, A:G.27, A:D.29, A:D.30 Salt bridges: B:D.25, A:D.25 Water bridges: A:I.50, A:I.50, A:I.50, A:I.50 AB2.2: 26 residues within 4Å: Chain A: D.25, G.27, A.28, D.30, V.32, I.47, G.48, G.49, I.50, T.80, P.81, V.82, I.84 Chain B: D.25, G.27, A.28, D.29, D.30, I.47, G.48, G.49, I.50, F.53, V.82, I.84 Ligands: AB2.1 20 PLIP interactions: 13 interactions with chain B, 7 interactions with chain A Hydrophobic interactions: B:I.50, B:I.50, B:F.53, B:V.82, B:I.84, A:A.28, A:V.32, A:P.81, A:V.82, A:I.84 Hydrogen bonds: B:G.27, B:D.29, B:D.30, A:D.30 Water bridges: B:I.50, B:I.50, B:I.50, B:I.50 Salt bridges: B:D.25, A:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brik, A. et al., 1,2,3-triazole as a peptide surrogate in the rapid synthesis of HIV-1 protease inhibitors. Chembiochem (2005)

Release Date

2005-06-21

Peptides

Pol polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Pol polyprotein

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