SMTL ID : 2a0k.1

Crystal structure of Nucleoside 2-deoxyribosyltransferase from Trypanosoma brucei at 1.8 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: H.6, H.8, M.9, K.11 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.11, A:K.11 Salt bridges: A:H.6, A:H.8, A:K.11 SO4.3: 5 residues within 4Å: Chain B: H.6, H.7, H.8, M.9, K.11 5 PLIP interactions: 5 interactions with chain B Water bridges: B:H.6, B:H.8 Salt bridges: B:H.6, B:H.8, B:K.11

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 11 residues within 4Å: Chain A: A.15, G.16, V.19, F.20, P.46, D.84, G.86, T.87, E.90 Chain B: N.134, M.136 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.16, A:D.84, A:T.87, A:T.87, B:N.134 Water bridges: B:N.134 GOL.4: 11 residues within 4Å: Chain A: N.134, M.136 Chain B: A.15, G.16, V.19, F.20, P.46, D.84, G.86, T.87, E.90 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.16, B:D.84, B:T.87, B:E.90, A:N.134 Water bridges: B:I.14, B:G.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bosch, J. et al., Using fragment cocktail crystallography to assist inhibitor design of Trypanosoma brucei nucleoside 2-deoxyribosyltransferase. J.Med.Chem. (2006)

Release Date

2005-07-26

Peptides

Nucleoside 2-deoxyribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nucleoside 2-deoxyribosyltransferase

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