SMTL ID : 2a89.2 (1 other biounit)

Monomeric Sarcosine Oxidase: Structure of a covalently flavinylated amine oxidizing enzyme

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: H.53, L.113, T.114, V.115, E.141, P.142, N.143, S.144 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.114, A:E.141, A:N.143, A:N.143 Water bridges: A:H.53 Salt bridges: A:H.53

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 6 residues within 4Å: Chain A: Y.317, T.318, F.342, S.343, G.344 Ligands: FCG.3 Ligand excluded by PLIP

1 x FCG: (N5,C4A)-(ALPHA-HYDROXY-PROPANO)-3,4,4A,5-TETRAHYDRO-FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FCG.3: 37 residues within 4Å: Chain A: V.9, G.10, G.12, S.13, M.14, V.32, D.33, A.34, F.35, H.39, G.42, S.43, H.44, R.49, I.50, T.171, R.172, V.173, S.200, M.201, G.202, W.204, L.208, Q.223, V.225, Y.254, F.256, C.315, M.316, Y.317, F.342, G.344, H.345, G.346, F.347, K.348 Ligands: CL.2 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:V.225, A:Y.254, A:Y.317 Hydrogen bonds: A:S.13, A:S.13, A:S.13, A:M.14, A:A.34, A:F.35, A:S.43, A:R.49, A:I.50, A:I.50, A:V.173, A:V.173, A:G.202, A:G.346, A:F.347, A:K.348, A:K.348 Water bridges: A:G.12, A:G.15, A:S.200, A:A.203 Salt bridges: A:H.44 pi-Stacking: A:Y.317 pi-Cation interactions: A:R.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Z.-W. et al., Structure of the sodium borohydride-reduced N-(cyclopropyl)glycine adduct of the flavoenzyme monomeric sarcosine oxidase. Biochemistry (2005)

Release Date

2006-01-17

Peptides

Monomeric sarcosine oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Monomeric sarcosine oxidase

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