SMTL ID : 2ad6.1

crystal structure of methanol dehydrogenase from M. W3A1 (form C)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-2-2-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: E.171, N.255, D.297, A.299 Ligands: PQQ.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.171, A:E.171, A:D.297 CA.3: 5 residues within 4Å: Chain C: E.171, N.255, D.297, A.299 Ligands: PQQ.4 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.171, C:E.171, C:D.297

2 x PQQ: PYRROLOQUINOLINE QUINONE(Non-covalent)

PQQ.2: 20 residues within 4Å: Chain A: E.55, C.103, C.104, V.107, R.109, T.153, S.168, G.169, A.170, E.171, T.235, W.237, N.255, A.299, R.324, N.387, W.467, G.530, W.531 Ligands: CA.1 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:W.237, A:W.467, A:W.531 Hydrogen bonds: A:R.109, A:S.168, A:G.169, A:A.170, A:E.171, A:T.235, A:R.324, A:R.324, A:N.387, A:W.531 Salt bridges: A:R.109, A:R.109 pi-Stacking: A:W.237, A:W.237 PQQ.4: 21 residues within 4Å: Chain C: E.55, C.103, C.104, V.107, R.109, T.153, S.168, G.169, A.170, E.171, T.235, W.237, N.255, D.297, A.299, R.324, N.387, W.467, G.530, W.531 Ligands: CA.3 19 PLIP interactions: 19 interactions with chain C Hydrophobic interactions: C:W.237, C:W.467, C:W.531 Hydrogen bonds: C:R.109, C:T.153, C:S.168, C:G.169, C:A.170, C:E.171, C:R.324, C:R.324, C:N.387, C:W.531 Water bridges: C:T.235, C:T.235 Salt bridges: C:R.109, C:R.109 pi-Stacking: C:W.237, C:W.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, J. et al., The enzymatic reaction-induced configuration change of the prosthetic group PQQ of methanol dehydrogenase. Biochem.Biophys.Res.Commun. (2011)

Release Date

2006-07-25

Peptides

Methanol dehydrogenase subunit 1: AC
Methanol dehydrogenase subunit 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Methanol dehydrogenase subunit 1

Methanol dehydrogenase subunit 2

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