SMTL ID : 2aee.2 (1 other biounit)

Crystal structure of Orotate phosphoribosyltransferase from Streptococcus pyogenes

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-tetramer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: L.126, I.127, S.128, T.129, G.130, G.131, S.132 Chain C: P.101, N.108 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.128, A:S.128, A:T.129, A:T.129, A:G.130, A:G.131, A:S.132, A:S.132 Water bridges: A:V.133 SO4.3: 6 residues within 4Å: Chain A: Y.96, R.98 Chain B: R.42, A.76, T.77, A.78 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:Y.96, B:A.76, B:T.77, B:A.78 Salt bridges: A:R.98, B:R.42 SO4.4: 7 residues within 4Å: Chain B: L.126, I.127, S.128, T.129, G.130, G.131, S.132 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:L.126, B:S.128, B:T.129, B:T.129, B:G.130, B:G.131, B:S.132 Water bridges: B:V.133 SO4.7: 9 residues within 4Å: Chain A: P.101, N.108 Chain C: L.126, I.127, S.128, T.129, G.130, G.131, S.132 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:S.128, C:S.128, C:T.129, C:T.129, C:G.130, C:G.131, C:S.132, C:S.132 Water bridges: C:V.133 SO4.9: 6 residues within 4Å: Chain C: Y.96, R.98 Chain D: R.42, A.76, T.77, A.78 6 PLIP interactions: 5 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:A.76, D:T.77, D:T.77, D:A.78 Salt bridges: D:R.42, C:R.98 SO4.10: 7 residues within 4Å: Chain D: L.126, I.127, S.128, T.129, G.130, G.131, S.132 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:L.126, D:S.128, D:T.129, D:G.130, D:G.131, D:S.132 Water bridges: D:V.133

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: R.42, A.76, T.77, A.78 Chain B: Y.96, R.98 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.42, A:R.42, A:A.76, A:T.77, A:A.78, B:R.98, B:R.98 Water bridges: A:G.79 GOL.6: 6 residues within 4Å: Chain B: T.39, D.40, N.41, R.42, A.78, D.125 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.41 GOL.8: 6 residues within 4Å: Chain C: R.42, A.76, T.77, A.78 Chain D: Y.96, R.98 9 PLIP interactions: 6 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:R.42, C:R.42, C:A.76, C:T.77, C:A.78, D:Y.96, D:R.98, D:R.98 Water bridges: C:G.79 GOL.12: 6 residues within 4Å: Chain D: T.39, D.40, N.41, R.42, A.78, D.125 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.41

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain A: K.102 Chain B: Y.38, R.42 Chain C: S.31 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain A: S.31 Chain C: K.102 Chain D: Y.38, R.42 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, C. et al., Crystal structure of Orotate phosphoribosyltransferase from Streptococcus pyogenes. To be Published

Release Date

2005-09-06

Peptides

Orotate phosphoribosyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Orotate phosphoribosyltransferase

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