SMTL ID : 2aqp.1 (1 other biounit)

CU/ZN superoxide dismutase from neisseria meningitidis E73A mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-dimer

Ligands

3 x CU1: COPPER (I) ION(Non-covalent)

CU1.1: 5 residues within 4Å: Chain A: H.57, H.59, H.82, M.136, H.138 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.57, A:H.59, A:H.138 CU1.3: 2 residues within 4Å: Chain A: E.35, H.126 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.126, H2O.8 CU1.10: 5 residues within 4Å: Chain B: H.57, H.59, H.82, M.136, H.138 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.57, B:H.59, B:H.138

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.82, H.91, H.100, D.103 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.82, A:H.91, A:H.100, A:D.103, A:D.103 ZN.11: 4 residues within 4Å: Chain B: H.82, H.91, H.100, D.103 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.82, B:H.91, B:H.100, B:D.103, B:D.103

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 7 residues within 4Å: Chain A: L.19, A.75, T.139, P.156, R.157, M.158 Ligands: EDO.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.157 Water bridges: A:L.19 EDO.5: 10 residues within 4Å: Chain A: G.52, L.53, T.108, V.109, H.111 Chain B: G.52, L.53, T.108, V.109, H.111 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:V.109 Water bridges: B:G.52, B:H.111, B:H.111, A:G.52 EDO.6: 4 residues within 4Å: Chain A: T.116, P.118 Chain B: D.142, N.143 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.116, A:T.116 Water bridges: A:N.117, B:H.144 EDO.7: 2 residues within 4Å: Chain A: N.143 Chain B: T.116 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:T.116, B:T.116 Water bridges: A:N.143, A:N.143 EDO.8: 5 residues within 4Å: Chain A: G.92, Y.93, Q.96, H.144, S.145 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.144 Water bridges: A:Y.93, A:Q.96 EDO.9: 1 residues within 4Å: Ligands: EDO.4 No protein-ligand interaction detected (PLIP) EDO.12: 3 residues within 4Å: Chain B: Q.47, D.112, T.114 1 PLIP interactions: 1 interactions with chain B Water bridges: B:D.112 EDO.13: 2 residues within 4Å: Chain B: D.45, T.116 No protein-ligand interaction detected (PLIP) EDO.14: 1 residues within 4Å: Chain B: Y.93 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

DiDonato, M. et al., CU/ZN superoxide dismutase from neisseria meningitidis E73A mutant. To be Published

Release Date

2006-10-31

Peptides

Superoxide dismutase [Cu-Zn]: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Superoxide dismutase [Cu-Zn]

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