SMTL ID : 2ax0.1 (1 other biounit)

Hepatitis C Virus NS5b RNA Polymerase in complex with a covalent inhibitor (5x)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.48, K.51, T.221, R.222, C.223 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:C.223 Water bridges: A:F.224, A:F.224, A:D.318 Salt bridges: A:R.48, A:K.51 SO4.2: 2 residues within 4Å: Chain A: R.510, R.514 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.514, A:R.514 Salt bridges: A:R.510, A:R.514 SO4.3: 5 residues within 4Å: Chain A: R.501, R.505, V.530, K.531, T.532 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.501, A:K.531, A:T.532, A:T.532 Salt bridges: A:R.505

1 x 5X: 5R-(2E-METHYL-3-PHENYL-ALLYL)-3-(BENZENESULFONYLAMINO)-4-OXO-2-THIONOTHIAZOLIDINE(Covalent)

5X.4: 15 residues within 4Å: Chain A: F.193, P.197, R.200, N.316, C.366, S.368, L.384, G.410, N.411, M.414, Y.415, Q.446, I.447, Y.448, S.556 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.197, A:L.384, A:M.414, A:Y.415, A:Y.415, A:Y.448 Hydrogen bonds: A:Y.448 Water bridges: A:G.449

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Powers, J.P. et al., SAR and Mode of Action of Novel Non-Nucleoside Inhibitors of Hepatitis C NS5b RNA Polymerase. J.Med.Chem. (2006)

Release Date

2006-01-24

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

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