- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG- NAG- MAN- MAN- MAN: alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
- 2 x NAG- NAG- MAN- MAN: alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
NAG-NAG-MAN-MAN.3: 7 residues within 4Å:- Chain A: Q.369, Y.371, Q.375, N.379, M.382, D.385, Y.386
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.375
NAG-NAG-MAN-MAN.6: 8 residues within 4Å:- Chain B: Q.369, Y.371, Q.375, N.379, S.381, M.382, D.385, Y.386
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Y.371, B:Q.375
- Water bridges: B:Y.371
- 7 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
BOG.7: 14 residues within 4Å:- Chain A: R.52, P.55, I.58, L.62, W.69, L.84, V.85, V.88, R.89, L.92, F.439, E.493, P.497
- Ligands: BOG.10
15 PLIP interactions:15 interactions with chain A- Hydrophobic interactions: A:L.62, A:W.69, A:L.84, A:V.85
- Hydrogen bonds: A:R.52, A:R.52, A:R.89, A:E.493
- Water bridges: A:S.54, A:R.89, A:R.89, A:R.89, A:R.89
- Salt bridges: A:R.52, A:R.89
BOG.8: 1 residues within 4Å:- Chain A: I.43
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:I.43
BOG.9: 3 residues within 4Å:- Chain A: T.39, P.41, W.46
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:W.46, A:W.46
- Hydrogen bonds: A:T.39
BOG.10: 8 residues within 4Å:- Chain A: F.60, L.61, H.64, G.65, W.67, L.68, W.69
- Ligands: BOG.7
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.68
- Water bridges: A:G.65
BOG.16: 12 residues within 4Å:- Chain B: R.52, P.55, I.58, L.61, L.62, L.84, V.85, V.88, R.89, L.92, F.439, E.493
13 PLIP interactions:13 interactions with chain B- Hydrophobic interactions: B:L.61, B:L.62, B:L.84, B:V.85
- Hydrogen bonds: B:R.52, B:V.88, B:R.89, B:E.493, B:E.493
- Water bridges: B:S.54, B:R.89
- Salt bridges: B:R.52, B:R.89
BOG.17: 3 residues within 4Å:- Chain B: S.56, F.57, F.60
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:F.57
- Hydrogen bonds: B:S.56
- Water bridges: B:S.54, B:S.54
BOG.18: 6 residues within 4Å:- Chain B: F.60, L.61, H.64, W.67, L.68, W.69
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:L.61, B:L.68
- 2 x FLP: FLURBIPROFEN(Non-covalent)
FLP.11: 14 residues within 4Å:- Chain A: V.85, R.89, V.318, L.321, Y.324, L.328, Y.354, W.356, M.491, I.492, G.495, A.496, S.499, L.500
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:V.318, A:L.321, A:Y.324, A:L.328, A:Y.354, A:W.356, A:W.356, A:I.492, A:A.496
- Hydrogen bonds: A:Y.324
- Salt bridges: A:R.89
FLP.19: 14 residues within 4Å:- Chain B: V.85, R.89, V.318, L.321, Y.324, L.328, Y.354, W.356, M.491, I.492, G.495, A.496, S.499, L.500
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:V.318, B:L.321, B:Y.324, B:L.328, B:Y.354, B:W.356, B:W.356, B:I.492, B:A.496
- Hydrogen bonds: B:Y.324
- Salt bridges: B:R.89
- 2 x MNH: MANGANESE PROTOPORPHYRIN IX(Non-covalent)
MNH.12: 23 residues within 4Å:- Chain A: Y.117, A.168, A.171, Q.172, T.175, H.176, F.179, K.180, T.181, L.264, N.351, Y.354, H.355, W.356, H.357, M.360, Y.373, L.377, I.413, H.415, V.416, D.419
- Ligands: GOL.15
18 PLIP interactions:18 interactions with chain A,- Hydrophobic interactions: A:A.171, A:Q.172, A:F.179, A:F.179, A:L.264, A:L.264, A:W.356, A:Y.373, A:L.377, A:L.377, A:I.413, A:V.416
- Hydrogen bonds: A:Y.117, A:F.179, A:T.181, A:N.351, A:D.419
- Metal complexes: A:H.357
MNH.20: 22 residues within 4Å:- Chain B: Y.117, A.168, A.171, Q.172, T.175, H.176, F.179, K.180, T.181, L.264, N.351, Y.354, H.355, W.356, H.357, M.360, Y.373, L.377, I.413, V.416, D.419
- Ligands: GOL.22
18 PLIP interactions:18 interactions with chain B,- Hydrophobic interactions: B:A.171, B:Q.172, B:F.179, B:F.179, B:L.264, B:L.264, B:W.356, B:Y.373, B:L.377, B:L.377, B:I.413, B:V.416
- Hydrogen bonds: B:Y.117, B:T.181, B:T.181, B:N.351
- Water bridges: B:F.179
- Metal complexes: B:H.357
- 5 x GOL: GLYCEROL(Non-functional Binders)
GOL.13: 9 residues within 4Å:- Chain A: Y.203, G.204, D.205, N.206, L.207, Q.210, R.302
- Chain B: W.108, S.112
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:W.108, B:S.112, A:R.302, A:R.302
- Water bridges: A:L.207
GOL.14: 5 residues within 4Å:- Chain A: K.220, Y.223, V.230, N.279, D.283
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.220, A:N.279, A:N.279
GOL.15: 5 residues within 4Å:- Chain A: Q.172, H.176, V.260, L.263
- Ligands: MNH.12
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.172
GOL.21: 4 residues within 4Å:- Chain B: K.220, Y.223, V.230, N.279
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.220, B:N.279
GOL.22: 5 residues within 4Å:- Chain B: Q.172, H.176, V.260, L.263
- Ligands: MNH.20
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.172
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gupta, K. et al., 2.0 angstroms structure of prostaglandin H2 synthase-1 reconstituted with a manganese porphyrin cofactor. Acta Crystallogr.,Sect.D (2006)
- Release Date
- 2006-01-24
- Peptides
- Prostaglandin G/H synthase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG- NAG- MAN- MAN- MAN: alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
- 2 x NAG- NAG- MAN- MAN: alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
- 7 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
- 2 x FLP: FLURBIPROFEN(Non-covalent)
- 2 x MNH: MANGANESE PROTOPORPHYRIN IX(Non-covalent)
- 5 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gupta, K. et al., 2.0 angstroms structure of prostaglandin H2 synthase-1 reconstituted with a manganese porphyrin cofactor. Acta Crystallogr.,Sect.D (2006)
- Release Date
- 2006-01-24
- Peptides
- Prostaglandin G/H synthase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B