SMTL ID : 2b9b.1

Structure of the Parainfluenza Virus 5 F Protein in its Metastable, Pre-fusion Conformation

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-trimer

Ligands

12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.46, T.48 No protein-ligand interaction detected (PLIP) NAG.2: 4 residues within 4Å: Chain A: M.35, N.54, T.244, Y.245 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:M.35 Hydrogen bonds: A:N.54, A:T.244, A:T.244 NAG.3: 3 residues within 4Å: Chain A: N.331, T.333, R.334 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.333 NAG.4: 2 residues within 4Å: Chain A: N.436 Chain B: V.435 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.436 Hydrophobic interactions: B:V.435 NAG.5: 2 residues within 4Å: Chain B: N.46, T.48 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.46 NAG.6: 6 residues within 4Å: Chain B: M.35, N.54, Q.124, T.244, Y.245, M.246 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.124 NAG.7: 2 residues within 4Å: Chain B: N.331, T.333 2 PLIP interactions: 2 interactions with chain B Water bridges: B:N.331, B:N.331 NAG.8: 2 residues within 4Å: Chain B: N.436 Chain C: V.435 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:N.436 Hydrophobic interactions: C:V.435 NAG.9: 3 residues within 4Å: Chain C: N.46, T.48, S.51 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.46, C:T.48, C:S.51 NAG.10: 3 residues within 4Å: Chain C: N.54, T.244, Y.245 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:Y.245 NAG.11: 3 residues within 4Å: Chain C: N.331, T.333, R.334 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.331, C:T.333 NAG.12: 3 residues within 4Å: Chain A: N.431 Chain C: N.436, S.440 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.440, C:S.440

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, H.-S. et al., Structure of the parainfluenza virus 5 F protein in its metastable, prefusion conformation. Nature (2006)

Release Date

2006-01-24

Peptides

Fusion glycoprotein F0: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Fusion glycoprotein F0