- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 4 x CB3: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID(Non-covalent)
CB3.2: 13 residues within 4Å:- Chain A: R.17, S.111, F.113, D.181, L.188, Y.194, L.226, L.229, H.241, Y.283
- Chain D: R.287
- Ligands: NDP.1, EDO.3
13 PLIP interactions:11 interactions with chain A, 2 interactions with chain D- Hydrophobic interactions: A:F.113, A:L.188, A:L.226, A:L.229
- Hydrogen bonds: A:R.17, A:S.111, A:Y.194, A:Y.194, A:Y.283
- pi-Stacking: A:F.113, A:F.113
- Water bridges: D:R.287
- Salt bridges: D:R.287
CB3.7: 14 residues within 4Å:- Chain B: R.17, S.111, F.113, D.181, L.188, Y.194, G.225, L.226, L.229, H.241, Y.283
- Chain C: R.287, A.288
- Ligands: NDP.6
15 PLIP interactions:12 interactions with chain B, 3 interactions with chain C- Hydrophobic interactions: B:F.113, B:L.188, B:L.188, B:L.226, B:L.229
- Hydrogen bonds: B:R.17, B:S.111, B:Y.194, B:H.241, B:Y.283, C:R.287, C:A.288
- pi-Stacking: B:F.113, B:F.113
- Salt bridges: C:R.287
CB3.10: 13 residues within 4Å:- Chain B: R.287, A.288
- Chain C: R.17, S.111, F.113, P.187, L.188, L.189, Y.194, L.226, L.229, Y.283
- Ligands: NDP.9
15 PLIP interactions:11 interactions with chain C, 4 interactions with chain B- Hydrophobic interactions: C:F.113, C:L.226
- Hydrogen bonds: C:R.17, C:S.111, C:L.189, C:Y.194, C:Y.194, C:Y.283, C:Y.283, B:R.287
- pi-Stacking: C:F.113, C:F.113
- Water bridges: B:R.287, B:R.287
- Salt bridges: B:R.287
CB3.12: 16 residues within 4Å:- Chain A: R.287, A.288
- Chain D: R.17, S.111, F.113, D.181, P.187, L.188, L.189, Y.194, L.226, L.229, H.241, Y.283
- Ligands: NDP.11, EDO.13
16 PLIP interactions:11 interactions with chain D, 5 interactions with chain A- Hydrophobic interactions: D:F.113, D:L.188, D:L.226
- Hydrogen bonds: D:R.17, D:S.111, D:L.189, D:Y.194, D:Y.283, A:R.287
- Water bridges: D:Q.186, A:R.287, A:R.287, A:R.287
- pi-Stacking: D:F.113, D:F.113
- Salt bridges: A:R.287
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 7 residues within 4Å:- Chain A: F.113, D.181, M.183, L.188, Y.194
- Chain D: R.287
- Ligands: CB3.2
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain A- Hydrogen bonds: D:R.287, D:R.287, A:M.183
- Water bridges: A:L.188
EDO.4: 7 residues within 4Å:- Chain A: G.199, E.202, R.206
- Chain B: G.199, E.202, R.206
- Ligands: EDO.5
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.206, A:E.202, A:R.206
EDO.5: 9 residues within 4Å:- Chain A: T.184, N.185, T.195, K.198, G.199
- Chain B: E.202, G.203, R.206
- Ligands: EDO.4
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:T.184, A:T.184, A:N.185, B:R.206
EDO.8: 5 residues within 4Å:- Chain A: N.68, I.149
- Chain B: N.68, A.141, I.149
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:N.68, B:N.68
EDO.13: 8 residues within 4Å:- Chain A: R.287
- Chain D: F.113, D.181, M.183, T.184, L.188, Y.194
- Ligands: CB3.12
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.287, A:R.287
EDO.14: 7 residues within 4Å:- Chain C: N.68, I.149
- Chain D: N.68, T.140, A.141, F.144, I.149
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:N.68, D:T.140, C:N.68
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schuettelkopf, A.W. et al., Structures of Leishmania Major Pteridine Reductase Complexes Reveal the Active Site Features Important for Ligand Binding and to Guide Inhibitor Design. J.Mol.Biol. (2005)
- Release Date
- 2005-08-31
- Peptides
- PTERIDINE REDUCTASE 1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 4 x CB3: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID(Non-covalent)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schuettelkopf, A.W. et al., Structures of Leishmania Major Pteridine Reductase Complexes Reveal the Active Site Features Important for Ligand Binding and to Guide Inhibitor Design. J.Mol.Biol. (2005)
- Release Date
- 2005-08-31
- Peptides
- PTERIDINE REDUCTASE 1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D