SMTL ID : 2brk.1

Crystal structure of Hepatitis C virus polymerase in complex with an allosteric inhibitor (compound 1)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.220, T.221, D.318 Ligands: MN.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.220, A:T.221, A:D.318, H2O.17, H2O.18 MN.2: 4 residues within 4Å: Chain A: D.220, D.318, D.319 Ligands: MN.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.220, A:D.318, A:D.319

1 x CMF: 3-CYCLOHEXYL-1-(2-MORPHOLIN-4-YL-2-OXOETHYL)-2-PHENYL-1H-INDOLE-6-CARBOXYLIC ACID(Non-covalent)

CMF.3: 15 residues within 4Å: Chain A: V.37, L.392, A.393, A.395, A.396, I.424, L.425, H.428, F.429, L.492, G.493, V.494, P.495, W.500, R.503 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.37, A:L.392, A:A.395, A:A.396, A:I.424, A:L.425, A:H.428, A:F.429, A:L.492, A:V.494, A:W.500 Salt bridges: A:R.503

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Di Marco, S. et al., Interdomain Communication in Hepatitis C Virus Polymerase Abolished by Small-Molecule Inhibitors Bound to a Novel Allosteric Site. J.Biol.Chem. (2005)

Release Date

2005-06-14

Peptides

RNA-DIRECTED RNA POLYMERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-DIRECTED RNA POLYMERASE

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