SMTL ID : 2bs5.1

LECTIN FROM RALSTONIA SOLANACEARUM COMPLEXED WITH 2-FUCOSYLLACTOSE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-trimer

Ligands

6 x BGC- GAL- FUC: alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose

BGC-GAL-FUC.1: 11 residues within 4Å: Chain A: R.17, E.28, D.32, Y.37, G.39, A.40, F.41, I.59, I.61, W.76, W.81 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.37, A:W.76, A:R.17, A:E.28, A:Y.37, A:A.40, A:F.41 Water bridges: A:S.15, A:D.32, A:Y.37, A:I.59, A:I.59, A:T.38 Hydrophobic interactions: A:I.61 BGC-GAL-FUC.2: 13 residues within 4Å: Chain A: W.53, H.60, R.62, E.73, D.77, G.84, A.85, Y.86 Chain B: V.13, P.14, I.16, W.31, W.36 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Salt bridges: A:H.60 Hydrogen bonds: B:V.13, A:R.62, A:E.73, A:A.85, A:Y.86 Hydrophobic interactions: A:W.53 BGC-GAL-FUC.4: 11 residues within 4Å: Chain B: R.17, E.28, D.32, Y.37, G.39, A.40, F.41, I.59, I.61, W.76, W.81 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Y.37, B:W.76, B:R.17, B:E.28, B:Y.37, B:A.40, B:F.41 Water bridges: B:S.15, B:D.32, B:Y.37, B:I.59, B:I.59, B:T.38 Hydrophobic interactions: B:I.61 BGC-GAL-FUC.5: 13 residues within 4Å: Chain B: W.53, H.60, R.62, E.73, D.77, G.84, A.85, Y.86 Chain C: V.13, P.14, I.16, W.31, W.36 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain C Salt bridges: B:H.60 Hydrogen bonds: C:V.13, B:R.62, B:E.73, B:A.85, B:Y.86 Hydrophobic interactions: B:W.53 BGC-GAL-FUC.7: 11 residues within 4Å: Chain C: R.17, E.28, D.32, Y.37, G.39, A.40, F.41, I.59, I.61, W.76, W.81 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:Y.37, C:W.76, C:R.17, C:E.28, C:Y.37, C:A.40, C:F.41 Water bridges: C:S.15, C:D.32, C:Y.37, C:I.59, C:I.59, C:T.38 Hydrophobic interactions: C:I.61 BGC-GAL-FUC.8: 13 residues within 4Å: Chain A: V.13, P.14, I.16, W.31, W.36 Chain C: W.53, H.60, R.62, E.73, D.77, G.84, A.85, Y.86 6 PLIP interactions: 1 interactions with chain A, 5 interactions with chain C Hydrogen bonds: A:V.13, C:R.62, C:E.73, C:A.85, C:Y.86 Salt bridges: C:H.60 Hydrophobic interactions: C:W.53

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: W.31, G.35, W.36 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain B: W.31, G.35, W.36 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain C: W.31, G.35, W.36 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kostlanova, N. et al., The Fucose-Binding Lectin from Ralstonia Solanacearum: A New Type of {Beta}-Propeller Architecture Formed by Oligomerization and Interacting with Fucoside, Fucosyllactose, and Plant Xyloglucan. J.Biol.Chem. (2005)

Release Date

2005-05-19

Peptides

FUCOSE-BINDING LECTIN PROTEIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

FUCOSE-BINDING LECTIN PROTEIN

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