SMTL ID : 2bt3.1

AGAO in complex with Ruthenium-C4-wire at 1.73 angstroms

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

homo-dimer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 4 residues within 4Å: Chain A: H.429, H.431, H.590, M.600 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.429, A:H.431, A:H.590, H2O.12, H2O.13 CU.13: 4 residues within 4Å: Chain B: H.429, H.431, H.590, M.600 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.429, B:H.431, B:H.590, H2O.31, H2O.33

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 6 residues within 4Å: Chain A: R.47, D.438, M.439, F.444, D.579, I.580 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.439, A:I.580 NA.14: 6 residues within 4Å: Chain B: R.47, D.438, M.439, F.444, D.579, I.580 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.438, B:D.579, B:I.580

2 x R4A: BIS[1H,1'H-2,2'-BIPYRIDINATO(2-)-KAPPA~2~N~1~,N~1'~]{3-[4-(1,10-DIHYDRO-1,10-PHENANTHROLIN-4-YL-KAPPA~2~N~1~,N~10~)BUTOXY]-N,N-DIMETHYLANILINATO(2-)}RUTHENIUM(Non-covalent)

R4A.3: 28 residues within 4Å: Chain A: E.100, F.103, A.133, P.134, L.135, S.136, W.166, Y.294, D.296, Y.300, Q.304, Y.305, A.306, N.307, I.326, R.334, T.376, I.377, G.378, N.379, Y.380, F.405 Chain B: S.354, D.355, L.356, W.357, G.359, N.361 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B, Hydrophobic interactions: A:F.103, A:F.103, A:A.133, A:L.135, A:W.166, A:Y.305, B:L.356, B:L.356 R4A.15: 28 residues within 4Å: Chain A: S.354, D.355, L.356, W.357, G.359, N.361 Chain B: E.100, F.103, A.133, P.134, L.135, S.136, W.166, Y.294, D.296, Y.300, Q.304, Y.305, A.306, N.307, I.326, R.334, T.376, I.377, G.378, N.379, Y.380, F.405 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain A, Hydrophobic interactions: B:F.103, B:F.103, B:A.133, B:L.135, B:W.166, B:Y.305, A:L.356, A:L.356

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 9 residues within 4Å: Chain A: G.348, I.349, R.365 Chain B: D.314, C.315, L.316, H.343, Y.385 Ligands: GOL.23 10 PLIP interactions: 7 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:L.316, B:Y.385, B:Y.385 Water bridges: B:H.343, B:H.343, B:K.399, A:I.349, A:I.349 Salt bridges: B:H.343, A:R.365 SO4.5: 3 residues within 4Å: Chain A: T.231, G.232, G.233 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.232 Water bridges: A:G.233 SO4.6: 3 residues within 4Å: Chain A: R.543, D.574, Q.578 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.543, A:D.574, A:D.574 Salt bridges: A:R.543 SO4.16: 9 residues within 4Å: Chain A: D.314, C.315, L.316, H.343, Y.385 Chain B: G.348, I.349, R.365 Ligands: GOL.11 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Water bridges: B:I.349, B:I.349 Salt bridges: B:R.365, A:H.343 Hydrogen bonds: A:L.316, A:Y.385 SO4.17: 3 residues within 4Å: Chain B: T.231, G.232, G.233 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.232 Water bridges: B:G.233 SO4.18: 3 residues within 4Å: Chain B: R.543, D.574, Q.578 4 PLIP interactions: 4 interactions with chain B Water bridges: B:R.543, B:D.574, B:Q.578 Salt bridges: B:R.543

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 15 residues within 4Å: Chain A: R.530, R.531, A.533, P.551, T.552, G.553, F.555, V.556, H.559, S.560, G.561, G.562, A.563, G.564, P.566 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.531, A:T.552, A:S.560, A:A.563 Water bridges: A:A.533 GOL.8: 7 residues within 4Å: Chain A: L.125, V.157, D.159, H.168, V.195, P.196, A.197 1 PLIP interactions: 1 interactions with chain A Water bridges: A:V.195 GOL.9: 7 residues within 4Å: Chain A: Q.517, L.588, D.603, T.604 Chain B: H.513, K.608, R.610 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.603, A:D.603, A:T.604, B:K.608, B:R.610 Water bridges: A:Q.517, A:D.603, A:T.604 GOL.10: 11 residues within 4Å: Chain A: K.240, R.617, S.618, P.619, V.620, L.621, D.622 Chain B: L.207, T.208, G.209, R.212 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.621, A:D.622 Water bridges: A:D.262, A:D.622 GOL.11: 8 residues within 4Å: Chain A: E.345, W.347, R.368, K.399 Chain B: D.346, W.347, G.348 Ligands: SO4.16 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Water bridges: B:D.346, B:W.347, A:Y.387 Hydrogen bonds: A:E.345, A:R.368, A:K.399 GOL.12: 8 residues within 4Å: Chain A: W.347, N.366, Y.389, D.391, T.393, E.395, K.608 Chain B: V.602 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.366, A:K.608 Water bridges: A:W.347, A:W.347, A:D.391, A:D.391 GOL.19: 15 residues within 4Å: Chain B: R.530, R.531, A.533, P.551, T.552, G.553, F.555, V.556, H.559, S.560, G.561, G.562, A.563, G.564, P.566 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.531, B:T.552, B:S.560, B:A.563 Water bridges: B:A.533 GOL.20: 7 residues within 4Å: Chain B: L.125, V.157, D.159, H.168, V.195, P.196, A.197 1 PLIP interactions: 1 interactions with chain B Water bridges: B:V.195 GOL.21: 7 residues within 4Å: Chain A: H.513, K.608, R.610 Chain B: Q.517, L.588, D.603, T.604 9 PLIP interactions: 1 interactions with chain A, 8 interactions with chain B Hydrogen bonds: A:R.610, B:D.603, B:D.603, B:T.604 Water bridges: B:Q.517, B:D.603, B:D.603, B:T.604, B:T.604 GOL.22: 11 residues within 4Å: Chain A: L.207, T.208, G.209, R.212 Chain B: K.240, R.617, S.618, P.619, V.620, L.621, D.622 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.621, B:D.622 Water bridges: B:D.262 GOL.23: 8 residues within 4Å: Chain A: D.346, W.347, G.348 Chain B: E.345, W.347, R.368, K.399 Ligands: SO4.4 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.345, B:R.368, B:K.399, B:K.399 Water bridges: B:H.343, B:Y.387, A:W.347 GOL.24: 8 residues within 4Å: Chain A: V.602 Chain B: W.347, N.366, Y.389, D.391, T.393, E.395, K.608 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.366, B:K.608 Water bridges: B:W.347, B:W.347, B:D.391

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Contakes, S.M. et al., Reversible Inhibition of Copper Amine Oxidase Activity by Channel-Blocking Ruthenium(II) and Rhenium(I) Molecular Wires. Proc.Natl.Acad.Sci.USA (2005)

Release Date

2005-09-05

Peptides

PHENYLETHYLAMINE OXIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PHENYLETHYLAMINE OXIDASE

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