- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 24 x CAQ: CATECHOL(Non-covalent)
CAQ.2: 9 residues within 4Å:- Chain A: P.19, Y.20
- Chain B: Y.109, Y.148, W.150, R.158, H.161, H.163
- Ligands: FE.1
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:P.19, A:Y.20, B:W.150, B:R.158
- Water bridges: A:Y.20
- Hydrogen bonds: B:R.158
- pi-Stacking: B:Y.148
CAQ.3: 7 residues within 4Å:- Chain A: H.37, L.39
- Chain B: F.52, S.53, K.56, F.57, R.129
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:F.52, B:K.56, B:K.56, B:F.57, A:L.39
- Hydrogen bonds: B:S.53
CAQ.5: 9 residues within 4Å:- Chain C: P.19, Y.20
- Chain D: Y.109, Y.148, W.150, R.158, H.161, H.163
- Ligands: FE.4
7 PLIP interactions:3 interactions with chain C, 4 interactions with chain D- Hydrophobic interactions: C:P.19, C:Y.20, D:W.150, D:R.158
- Water bridges: C:Y.20
- Hydrogen bonds: D:R.158
- pi-Stacking: D:Y.148
CAQ.6: 7 residues within 4Å:- Chain C: H.37, L.39
- Chain D: F.52, S.53, K.56, F.57, R.129
6 PLIP interactions:5 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:F.52, D:K.56, D:K.56, D:F.57, C:L.39
- Hydrogen bonds: D:S.53
CAQ.8: 9 residues within 4Å:- Chain E: P.19, Y.20
- Chain F: Y.109, Y.148, W.150, R.158, H.161, H.163
- Ligands: FE.7
7 PLIP interactions:4 interactions with chain F, 3 interactions with chain E- Hydrophobic interactions: F:W.150, F:R.158, E:P.19, E:Y.20
- Hydrogen bonds: F:R.158
- pi-Stacking: F:Y.148
- Water bridges: E:Y.20
CAQ.9: 7 residues within 4Å:- Chain E: H.37, L.39
- Chain F: F.52, S.53, K.56, F.57, R.129
6 PLIP interactions:5 interactions with chain F, 1 interactions with chain E- Hydrophobic interactions: F:F.52, F:K.56, F:K.56, F:F.57, E:L.39
- Hydrogen bonds: F:S.53
CAQ.11: 9 residues within 4Å:- Chain G: P.19, Y.20
- Chain H: Y.109, Y.148, W.150, R.158, H.161, H.163
- Ligands: FE.10
7 PLIP interactions:4 interactions with chain H, 3 interactions with chain G- Hydrophobic interactions: H:W.150, H:R.158, G:P.19, G:Y.20
- Hydrogen bonds: H:R.158
- pi-Stacking: H:Y.148
- Water bridges: G:Y.20
CAQ.12: 7 residues within 4Å:- Chain G: H.37, L.39
- Chain H: F.52, S.53, K.56, F.57, R.129
6 PLIP interactions:1 interactions with chain G, 5 interactions with chain H- Hydrophobic interactions: G:L.39, H:F.52, H:K.56, H:K.56, H:F.57
- Hydrogen bonds: H:S.53
CAQ.14: 9 residues within 4Å:- Chain I: P.19, Y.20
- Chain J: Y.109, Y.148, W.150, R.158, H.161, H.163
- Ligands: FE.13
7 PLIP interactions:3 interactions with chain I, 4 interactions with chain J- Hydrophobic interactions: I:P.19, I:Y.20, J:W.150, J:R.158
- Water bridges: I:Y.20
- Hydrogen bonds: J:R.158
- pi-Stacking: J:Y.148
CAQ.15: 7 residues within 4Å:- Chain I: H.37, L.39
- Chain J: F.52, S.53, K.56, F.57, R.129
6 PLIP interactions:5 interactions with chain J, 1 interactions with chain I- Hydrophobic interactions: J:F.52, J:K.56, J:K.56, J:F.57, I:L.39
- Hydrogen bonds: J:S.53
CAQ.17: 9 residues within 4Å:- Chain K: P.19, Y.20
- Chain L: Y.109, Y.148, W.150, R.158, H.161, H.163
- Ligands: FE.16
7 PLIP interactions:3 interactions with chain K, 4 interactions with chain L- Hydrophobic interactions: K:P.19, K:Y.20, L:W.150, L:R.158
- Water bridges: K:Y.20
- Hydrogen bonds: L:R.158
- pi-Stacking: L:Y.148
CAQ.18: 7 residues within 4Å:- Chain K: H.37, L.39
- Chain L: F.52, S.53, K.56, F.57, R.129
6 PLIP interactions:1 interactions with chain K, 5 interactions with chain L- Hydrophobic interactions: K:L.39, L:F.52, L:K.56, L:K.56, L:F.57
- Hydrogen bonds: L:S.53
CAQ.20: 9 residues within 4Å:- Chain M: P.19, Y.20
- Chain N: Y.109, Y.148, W.150, R.158, H.161, H.163
- Ligands: FE.19
7 PLIP interactions:4 interactions with chain N, 3 interactions with chain M- Hydrophobic interactions: N:W.150, N:R.158, M:P.19, M:Y.20
- Hydrogen bonds: N:R.158
- pi-Stacking: N:Y.148
- Water bridges: M:Y.20
CAQ.21: 7 residues within 4Å:- Chain M: H.37, L.39
- Chain N: F.52, S.53, K.56, F.57, R.129
6 PLIP interactions:5 interactions with chain N, 1 interactions with chain M- Hydrophobic interactions: N:F.52, N:K.56, N:K.56, N:F.57, M:L.39
- Hydrogen bonds: N:S.53
CAQ.23: 9 residues within 4Å:- Chain O: P.19, Y.20
- Chain P: Y.109, Y.148, W.150, R.158, H.161, H.163
- Ligands: FE.22
7 PLIP interactions:3 interactions with chain O, 4 interactions with chain P- Hydrophobic interactions: O:P.19, O:Y.20, P:W.150, P:R.158
- Water bridges: O:Y.20
- Hydrogen bonds: P:R.158
- pi-Stacking: P:Y.148
CAQ.24: 7 residues within 4Å:- Chain O: H.37, L.39
- Chain P: F.52, S.53, K.56, F.57, R.129
6 PLIP interactions:5 interactions with chain P, 1 interactions with chain O- Hydrophobic interactions: P:F.52, P:K.56, P:K.56, P:F.57, O:L.39
- Hydrogen bonds: P:S.53
CAQ.26: 9 residues within 4Å:- Chain Q: P.19, Y.20
- Chain R: Y.109, Y.148, W.150, R.158, H.161, H.163
- Ligands: FE.25
7 PLIP interactions:4 interactions with chain R, 3 interactions with chain Q- Hydrophobic interactions: R:W.150, R:R.158, Q:P.19, Q:Y.20
- Hydrogen bonds: R:R.158
- pi-Stacking: R:Y.148
- Water bridges: Q:Y.20
CAQ.27: 7 residues within 4Å:- Chain Q: H.37, L.39
- Chain R: F.52, S.53, K.56, F.57, R.129
6 PLIP interactions:5 interactions with chain R, 1 interactions with chain Q- Hydrophobic interactions: R:F.52, R:K.56, R:K.56, R:F.57, Q:L.39
- Hydrogen bonds: R:S.53
CAQ.29: 9 residues within 4Å:- Chain S: P.19, Y.20
- Chain T: Y.109, Y.148, W.150, R.158, H.161, H.163
- Ligands: FE.28
7 PLIP interactions:3 interactions with chain S, 4 interactions with chain T- Hydrophobic interactions: S:P.19, S:Y.20, T:W.150, T:R.158
- Water bridges: S:Y.20
- Hydrogen bonds: T:R.158
- pi-Stacking: T:Y.148
CAQ.30: 7 residues within 4Å:- Chain S: H.37, L.39
- Chain T: F.52, S.53, K.56, F.57, R.129
6 PLIP interactions:5 interactions with chain T, 1 interactions with chain S- Hydrophobic interactions: T:F.52, T:K.56, T:K.56, T:F.57, S:L.39
- Hydrogen bonds: T:S.53
CAQ.32: 9 residues within 4Å:- Chain U: P.19, Y.20
- Chain V: Y.109, Y.148, W.150, R.158, H.161, H.163
- Ligands: FE.31
7 PLIP interactions:3 interactions with chain U, 4 interactions with chain V- Hydrophobic interactions: U:P.19, U:Y.20, V:W.150, V:R.158
- Water bridges: U:Y.20
- Hydrogen bonds: V:R.158
- pi-Stacking: V:Y.148
CAQ.33: 7 residues within 4Å:- Chain U: H.37, L.39
- Chain V: F.52, S.53, K.56, F.57, R.129
6 PLIP interactions:5 interactions with chain V, 1 interactions with chain U- Hydrophobic interactions: V:F.52, V:K.56, V:K.56, V:F.57, U:L.39
- Hydrogen bonds: V:S.53
CAQ.35: 9 residues within 4Å:- Chain W: P.19, Y.20
- Chain X: Y.109, Y.148, W.150, R.158, H.161, H.163
- Ligands: FE.34
7 PLIP interactions:3 interactions with chain W, 4 interactions with chain X- Hydrophobic interactions: W:P.19, W:Y.20, X:W.150, X:R.158
- Water bridges: W:Y.20
- Hydrogen bonds: X:R.158
- pi-Stacking: X:Y.148
CAQ.36: 7 residues within 4Å:- Chain W: H.37, L.39
- Chain X: F.52, S.53, K.56, F.57, R.129
6 PLIP interactions:5 interactions with chain X, 1 interactions with chain W- Hydrophobic interactions: X:F.52, X:K.56, X:K.56, X:F.57, W:L.39
- Hydrogen bonds: X:S.53
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brown, C.K. et al., Biophysical Analyses of Designed and Selected Mutants of Protocatechuate 3,4-Dioxygenase. Annu.Rev.Microbiol. (2004)
- Release Date
- 2006-09-05
- Peptides
- PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN: ACEGIKMOQSUW
PROTOCATECHUATE 3,4-DIOXYGENASE BETA CHAIN: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AG
AI
AK
AM
AO
AQ
AS
AU
AW
AB
BD
BF
BH
BJ
BL
BN
BP
BR
BT
BV
BX
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 24 x CAQ: CATECHOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brown, C.K. et al., Biophysical Analyses of Designed and Selected Mutants of Protocatechuate 3,4-Dioxygenase. Annu.Rev.Microbiol. (2004)
- Release Date
- 2006-09-05
- Peptides
- PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN: ACEGIKMOQSUW
PROTOCATECHUATE 3,4-DIOXYGENASE BETA CHAIN: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AG
AI
AK
AM
AO
AQ
AS
AU
AW
AB
BD
BF
BH
BJ
BL
BN
BP
BR
BT
BV
BX
B