SMTL ID : 2c2w.1

The fluorinase from Streptomyces cattleya is also a chlorinase. Structure of 5'-chloro-5'-deoxyadenosine crystallised in the fluorinase.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

6 x 5CD: 5'-CHLORO-5'-DEOXYADENOSINE(Non-covalent)

5CD.1: 18 residues within 4Å: Chain A: D.16, L.17, W.50, T.76, Y.77, P.78, T.80, T.155, F.156, S.158 Chain B: F.213, N.215, F.254, A.276, R.277, N.278, A.279, A.280 10 PLIP interactions: 4 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:D.16, A:D.16, A:Y.77, A:S.158, B:N.215, B:R.277, B:A.279 Water bridges: B:R.277 pi-Stacking: B:F.254, B:F.254 5CD.5: 18 residues within 4Å: Chain B: D.16, L.17, W.50, T.76, Y.77, P.78, T.80, T.155, F.156, S.158 Chain C: F.213, N.215, F.254, A.276, R.277, N.278, A.279, A.280 9 PLIP interactions: 4 interactions with chain B, 5 interactions with chain C Hydrogen bonds: B:D.16, B:D.16, B:Y.77, B:S.158, C:N.215, C:N.215, C:A.279 pi-Stacking: C:F.254, C:F.254 5CD.8: 18 residues within 4Å: Chain A: F.213, N.215, F.254, A.276, R.277, N.278, A.279, A.280 Chain C: D.16, L.17, W.50, T.76, Y.77, P.78, T.80, T.155, F.156, S.158 10 PLIP interactions: 6 interactions with chain A, 4 interactions with chain C Hydrogen bonds: A:N.215, A:R.277, A:A.279, C:D.16, C:D.16, C:Y.77, C:S.158 Water bridges: A:R.277 pi-Stacking: A:F.254, A:F.254 5CD.11: 18 residues within 4Å: Chain D: D.16, L.17, W.50, T.76, Y.77, P.78, T.80, T.155, F.156, S.158 Chain E: F.213, N.215, F.254, A.276, R.277, N.278, A.279, A.280 11 PLIP interactions: 6 interactions with chain E, 5 interactions with chain D Hydrogen bonds: E:N.215, E:R.277, E:A.279, D:D.16, D:D.16, D:T.76, D:Y.77, D:S.158 Water bridges: E:R.277 pi-Stacking: E:F.254, E:F.254 5CD.15: 18 residues within 4Å: Chain E: D.16, L.17, W.50, T.76, Y.77, P.78, T.80, T.155, F.156, S.158 Chain F: F.213, N.215, F.254, A.276, R.277, N.278, A.279, A.280 10 PLIP interactions: 5 interactions with chain F, 5 interactions with chain E Hydrogen bonds: F:N.215, F:N.215, F:A.279, E:D.16, E:D.16, E:T.76, E:Y.77, E:S.158 pi-Stacking: F:F.254, F:F.254 5CD.18: 18 residues within 4Å: Chain D: F.213, N.215, F.254, A.276, R.277, N.278, A.279, A.280 Chain F: D.16, L.17, W.50, T.76, Y.77, P.78, T.80, T.155, F.156, S.158 11 PLIP interactions: 6 interactions with chain D, 5 interactions with chain F Hydrogen bonds: D:N.215, D:R.277, D:A.279, F:D.16, F:D.16, F:T.76, F:Y.77, F:S.158 Water bridges: D:R.277 pi-Stacking: D:F.254, D:F.254

14 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: H.287, K.289 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: N.268, S.269 Chain C: T.155 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: F.110, R.112 Chain C: S.33 Ligand excluded by PLIP CL.6: 6 residues within 4Å: Chain B: D.210, N.215, W.217, F.254, Y.266, N.268 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain B: H.287 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain C: T.82, R.85, Y.157 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain C: E.133, Y.272 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain D: H.287, K.289 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain D: N.268, S.269 Chain F: T.155 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain D: F.110, R.112 Chain F: S.33 Ligand excluded by PLIP CL.16: 6 residues within 4Å: Chain E: D.210, N.215, W.217, F.254, Y.266, N.268 Ligand excluded by PLIP CL.17: 1 residues within 4Å: Chain E: H.287 Ligand excluded by PLIP CL.19: 3 residues within 4Å: Chain F: T.82, R.85, Y.157 Ligand excluded by PLIP CL.20: 2 residues within 4Å: Chain F: E.133, Y.272 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deng, H. et al., The fluorinase from Streptomyces cattleya is also a chlorinase. Angew. Chem. Int. Ed. Engl. (2006)

Release Date

2005-12-19

Peptides

5'-FLUORO-5'-DEOXYADENOSINE SYNTHASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

5'-FLUORO-5'-DEOXYADENOSINE SYNTHASE

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