SMTL ID : 2c36.1 (1 other biounit)

Structure of unliganded HSV gD reveals a mechanism for receptor- mediated activation of virus entry

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.1: 5 residues within 4Å: Chain A: Q.19, Q.69, N.72, N.149, Y.284 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.284

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: H.17, R.112, D.193 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.17, A:D.193, A:D.193

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: Q.5, F.201, I.202, N.205 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain A: K.223 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krummenacher, C. et al., Structure of unliganded HSV gD reveals a mechanism for receptor-mediated activation of virus entry. EMBO J. (2005)

Release Date

2005-11-23

Peptides

GLYCOPROTEIN D HSV-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GLYCOPROTEIN D HSV-1

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