SMTL ID : 2c5r.1

The structure of phage phi29 replication organizer protein p16.7 in complex with double stranded DNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-hexamer

Ligands

1 x DT- DC- DC- DA- DC- DC- DG- DG: 5'-D(*TP*CP*CP*AP*CP*CP*GP*GP)-3'(Non-covalent)

DT-DC-DC-DA-DC-DC-DG-DG.1: 12 residues within 4Å: Chain D: K.60 Chain F: K.60, R.63, L.66 Ligands: DC-DC-DG-DG-DT-DG-DG-DA.2, DC-DC-DG-DG-DT-DG-DG-DA.2, DC-DC-DG-DG-DT-DG-DG-DA.2, DC-DC-DG-DG-DT-DG-DG-DA.2, DC-DC-DG-DG-DT-DG-DG-DA.2, DC-DC-DG-DG-DT-DG-DG-DA.2, DC-DC-DG-DG-DT-DG-DG-DA.2, DC-DC-DG-DG-DT-DG-DG-DA.2 Protein-ligand interaction information (PLIP) not available

1 x DC- DC- DG- DG- DT- DG- DG- DA: 5'-D(*CP*CP*GP*GP*TP*GP*GP*AP)-3'(Non-covalent)

DC-DC-DG-DG-DT-DG-DG-DA.2: 15 residues within 4Å: Chain B: Q.58 Chain C: K.54 Chain D: Q.58 Chain E: Q.58 Chain F: K.54, L.55, Q.58 Ligands: DT-DC-DC-DA-DC-DC-DG-DG.1, DT-DC-DC-DA-DC-DC-DG-DG.1, DT-DC-DC-DA-DC-DC-DG-DG.1, DT-DC-DC-DA-DC-DC-DG-DG.1, DT-DC-DC-DA-DC-DC-DG-DG.1, DT-DC-DC-DA-DC-DC-DG-DG.1, DT-DC-DC-DA-DC-DC-DG-DG.1, DT-DC-DC-DA-DC-DC-DG-DG.1 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Albert, A. et al., Structural Basis for Membrane Anchorage of Viral Phi 29 DNA During Replication. J.Biol.Chem. (2005)

Release Date

2005-11-08

Peptides

EARLY PROTEIN P16.7: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

EARLY PROTEIN P16.7

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