SMTL ID : 2c95.1 (1 other biounit)

Structure of adenylate kinase 1 in complex with P1,P4-di(adenosine) tetraphosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

1 x B4P: BIS(ADENOSINE)-5'-TETRAPHOSPHATE(Non-covalent)

B4P.1: 28 residues within 4Å: Chain A: G.17, P.18, G.19, S.20, G.21, K.22, G.23, T.24, T.40, G.41, L.44, R.45, M.62, Q.66, L.67, V.68, V.73, G.95, Y.96, R.98, Q.102, R.129, R.133, R.139, R.150, G.178, S.179, V.180 43 PLIP interactions: 43 interactions with chain A Hydrogen bonds: A:G.19, A:S.20, A:G.21, A:K.22, A:G.23, A:T.24, A:T.24, A:T.40, A:Q.66, A:V.68, A:R.98, A:Q.102, A:Q.102, A:G.178 Water bridges: A:K.22, A:T.24, A:S.39, A:T.40, A:D.42, A:R.45, A:D.94, A:R.129, A:R.129, A:R.133, A:R.139, A:R.139, A:R.150, A:R.150 Salt bridges: A:K.22, A:K.22, A:K.22, A:K.22, A:R.45, A:R.98, A:R.98, A:R.133, A:R.133, A:R.139, A:R.139, A:R.139, A:R.150 pi-Cation interactions: A:R.98, A:R.129

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.2: 8 residues within 4Å: Chain A: R.45, S.59, M.62, E.63, G.138, R.139, V.140, D.141 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.140, A:D.141, A:D.141 Water bridges: A:R.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bunkoczi, G. et al., Structure of Adenylate Kinase 1 in Complex with P1, P4-Di(Adenosine)Tetraphosphate. To be Published

Release Date

2007-02-20

Peptides

ADENYLATE KINASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ADENYLATE KINASE 1

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