SMTL ID : 2cc2.1

X-ray crystal structure of 5'-fluorodeoxyadenosine synthase from Streptomyces cattleya complexed with 5'deoxyadenosine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

6 x 5AD: 5'-DEOXYADENOSINE(Non-covalent)

5AD.1: 18 residues within 4Å: Chain A: F.213, N.215, F.254, R.277, N.278, A.279, A.280 Chain C: D.16, L.17, W.50, T.76, Y.77, P.78, T.80, T.155, F.156, Y.157, S.158 11 PLIP interactions: 6 interactions with chain A, 5 interactions with chain C Hydrogen bonds: A:N.215, A:R.277, A:A.279, C:D.16, C:W.50, C:Y.77, C:S.158 Water bridges: A:R.277 pi-Stacking: A:F.254, A:F.254 Hydrophobic interactions: C:F.156 5AD.2: 16 residues within 4Å: Chain A: D.16, W.50, T.76, Y.77, P.78, T.80, T.155, F.156, Y.157, S.158 Chain B: F.213, N.215, F.254, R.277, N.278, A.279 11 PLIP interactions: 6 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:N.215, B:R.277, B:A.279, A:D.16, A:W.50, A:Y.77, A:S.158 Water bridges: B:R.277 pi-Stacking: B:F.254, B:F.254 Hydrophobic interactions: A:F.156 5AD.3: 17 residues within 4Å: Chain B: D.16, W.50, T.76, Y.77, P.78, T.80, T.155, F.156, Y.157, S.158 Chain C: F.213, N.215, F.254, R.277, N.278, A.279, A.280 10 PLIP interactions: 5 interactions with chain B, 5 interactions with chain C Hydrophobic interactions: B:F.156 Hydrogen bonds: B:D.16, B:W.50, B:Y.77, B:S.158, C:N.215, C:N.215, C:A.279 pi-Stacking: C:F.254, C:F.254 5AD.5: 18 residues within 4Å: Chain D: F.213, N.215, F.254, R.277, N.278, A.279, A.280 Chain F: D.16, L.17, W.50, T.76, Y.77, P.78, T.80, T.155, F.156, Y.157, S.158 12 PLIP interactions: 6 interactions with chain D, 6 interactions with chain F Hydrogen bonds: D:N.215, D:R.277, D:A.279, F:D.16, F:W.50, F:T.76, F:Y.77, F:S.158 Water bridges: D:R.277 pi-Stacking: D:F.254, D:F.254 Hydrophobic interactions: F:F.156 5AD.6: 16 residues within 4Å: Chain D: D.16, W.50, T.76, Y.77, P.78, T.80, T.155, F.156, Y.157, S.158 Chain E: F.213, N.215, F.254, R.277, N.278, A.279 12 PLIP interactions: 6 interactions with chain D, 6 interactions with chain E Hydrophobic interactions: D:F.156 Hydrogen bonds: D:D.16, D:W.50, D:T.76, D:Y.77, D:S.158, E:N.215, E:R.277, E:A.279 Water bridges: E:R.277 pi-Stacking: E:F.254, E:F.254 5AD.7: 17 residues within 4Å: Chain E: D.16, W.50, T.76, Y.77, P.78, T.80, T.155, F.156, Y.157, S.158 Chain F: F.213, N.215, F.254, R.277, N.278, A.279, A.280 11 PLIP interactions: 6 interactions with chain E, 5 interactions with chain F Hydrophobic interactions: E:F.156 Hydrogen bonds: E:D.16, E:W.50, E:T.76, E:Y.77, E:S.158, F:N.215, F:N.215, F:A.279 pi-Stacking: F:F.254, F:F.254

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.8: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cobb, S.L. et al., Substrate specificity in enzymatic fluorination. The fluorinase from Streptomyces cattleya accepts 2'-deoxyadenosine substrates. Org. Biomol. Chem. (2006)

Release Date

2007-03-20

Peptides

5'-FLUORO-5'-DEOXYADENOSINE SYNTHASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

5'-FLUORO-5'-DEOXYADENOSINE SYNTHASE

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