- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CU: COPPER (II) ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.2: 6 residues within 4Å:- Chain A: R.47, D.438, M.439, F.444, D.579, I.580
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:I.580, A:I.580
NA.16: 6 residues within 4Å:- Chain B: R.47, D.438, M.439, F.444, D.579, I.580
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:M.439, B:D.579, B:I.580
- 2 x R5A: RUTHENIUM WIRE, 5 CARBON LINKER(Non-covalent)
R5A.3: 23 residues within 4Å:- Chain A: E.100, E.101, F.103, E.104, A.133, P.134, L.135, S.136, W.166, Y.294, D.296, Y.300, Y.305, T.376, I.377, G.378, N.379, Y.380, F.405
- Chain B: L.356, W.357, G.359
- Ligands: R5B.4
11 PLIP interactions:9 interactions with chain A, 2 interactions with chain B,- Hydrophobic interactions: A:E.100, A:E.100, A:F.103, A:F.103, A:A.133, A:L.135, A:W.166, A:Y.305, A:Y.305, B:L.356, B:L.356
R5A.17: 23 residues within 4Å:- Chain A: L.356, W.357, G.359
- Chain B: E.100, E.101, F.103, E.104, A.133, P.134, L.135, S.136, W.166, Y.294, D.296, Y.300, Y.305, T.376, I.377, G.378, N.379, Y.380, F.405
- Ligands: R5B.18
11 PLIP interactions:9 interactions with chain B, 2 interactions with chain A,- Hydrophobic interactions: B:E.100, B:E.100, B:F.103, B:F.103, B:A.133, B:L.135, B:W.166, B:Y.305, B:Y.305, A:L.356, A:L.356
- 2 x R5B: RUTHENIUM WIRE WC5(Non-covalent)
R5B.4: 22 residues within 4Å:- Chain A: E.100, E.101, F.103, E.104, A.133, P.134, L.135, S.136, W.166, Y.294, D.296, Y.300, Y.305, R.334, I.377, G.378, N.379, Y.380, F.405
- Chain B: L.356, W.357
- Ligands: R5A.3
7 PLIP interactions:7 interactions with chain A,- Hydrophobic interactions: A:E.100, A:F.103, A:F.103, A:A.133, A:L.135, A:W.166
- Hydrogen bonds: A:E.100
R5B.18: 22 residues within 4Å:- Chain A: L.356, W.357
- Chain B: E.100, E.101, F.103, E.104, A.133, P.134, L.135, S.136, W.166, Y.294, D.296, Y.300, Y.305, R.334, I.377, G.378, N.379, Y.380, F.405
- Ligands: R5A.17
7 PLIP interactions:7 interactions with chain B,- Hydrophobic interactions: B:E.100, B:F.103, B:F.103, B:A.133, B:L.135, B:W.166
- Hydrogen bonds: B:E.100
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 3 residues within 4Å:- Chain A: T.231, G.232, G.233
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.232
- Water bridges: A:G.233
SO4.6: 3 residues within 4Å:- Chain A: R.543, D.574, Q.578
5 PLIP interactions:5 interactions with chain A- Water bridges: A:R.543, A:D.574, A:D.574, A:Q.578
- Salt bridges: A:R.543
SO4.14: 9 residues within 4Å:- Chain A: G.348, I.349, R.365
- Chain B: D.314, C.315, L.316, H.343, Y.385
- Ligands: GOL.26
9 PLIP interactions:7 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:L.316, B:Y.385, B:Y.385, A:I.349
- Water bridges: B:H.343, B:H.343, B:K.399
- Salt bridges: B:H.343, A:R.365
SO4.19: 3 residues within 4Å:- Chain B: T.231, G.232, G.233
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.232
- Water bridges: B:G.233
SO4.20: 3 residues within 4Å:- Chain B: R.543, D.574, Q.578
5 PLIP interactions:5 interactions with chain B- Water bridges: B:R.543, B:D.574, B:Q.578, B:Q.578
- Salt bridges: B:R.543
SO4.28: 9 residues within 4Å:- Chain A: D.314, C.315, L.316, H.343, Y.385
- Chain B: G.348, I.349, R.365
- Ligands: GOL.12
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:L.316, A:Y.385, B:I.349
- Water bridges: A:K.399
- Salt bridges: A:H.343, B:R.365
- 14 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 15 residues within 4Å:- Chain A: R.530, R.531, A.533, P.551, T.552, G.553, F.555, V.556, H.559, S.560, G.561, G.562, A.563, G.564, P.566
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.531, A:T.552, A:S.560, A:A.563
- Water bridges: A:A.533, A:F.555
GOL.8: 7 residues within 4Å:- Chain A: L.125, V.157, D.159, H.168, V.195, P.196, A.197
No protein-ligand interaction detected (PLIP)GOL.9: 7 residues within 4Å:- Chain A: Q.517, L.588, D.603, T.604
- Chain B: H.513, K.608, R.610
7 PLIP interactions:3 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:K.608, B:K.608, A:D.603
- Water bridges: B:H.513, A:Q.517, A:Q.517, A:Q.517
GOL.10: 6 residues within 4Å:- Chain A: D.442, G.443, F.444, T.445, N.497, E.499
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:F.444, A:T.445, A:T.445, A:T.445, A:N.497
GOL.11: 10 residues within 4Å:- Chain A: K.240, R.617, S.618, P.619, V.620, L.621, D.622
- Chain B: L.207, T.208, R.212
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.618, A:L.621, A:D.622
GOL.12: 8 residues within 4Å:- Chain A: E.345, W.347, R.368, K.399
- Chain B: D.346, W.347, G.348
- Ligands: SO4.28
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:E.345, A:R.368, A:E.397
- Water bridges: A:Y.387, B:D.346, B:W.347
GOL.13: 9 residues within 4Å:- Chain A: W.347, N.366, Y.389, D.391, T.393, E.395, K.608
- Chain B: V.602, T.604
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:N.366, A:K.608, B:V.602
- Water bridges: A:W.347, A:D.391
GOL.21: 15 residues within 4Å:- Chain B: R.530, R.531, A.533, P.551, T.552, G.553, F.555, V.556, H.559, S.560, G.561, G.562, A.563, G.564, P.566
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:R.531, B:T.552, B:S.560, B:A.563
- Water bridges: B:A.533, B:F.555
GOL.22: 7 residues within 4Å:- Chain B: L.125, V.157, D.159, H.168, V.195, P.196, A.197
No protein-ligand interaction detected (PLIP)GOL.23: 7 residues within 4Å:- Chain A: H.513, K.608, R.610
- Chain B: Q.517, L.588, D.603, T.604
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:K.608, B:D.603
- Water bridges: A:H.513, A:H.513, B:Q.517, B:Q.517, B:D.603
GOL.24: 6 residues within 4Å:- Chain B: D.442, G.443, F.444, T.445, N.497, E.499
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:F.444, B:T.445, B:T.445, B:N.497
GOL.25: 10 residues within 4Å:- Chain A: L.207, T.208, R.212
- Chain B: K.240, R.617, S.618, P.619, V.620, L.621, D.622
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.618, B:L.621, B:D.622
GOL.26: 8 residues within 4Å:- Chain A: D.346, W.347, G.348
- Chain B: E.345, W.347, R.368, K.399
- Ligands: SO4.14
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:E.345, B:R.368, B:E.397, B:K.399
- Water bridges: B:H.343, A:W.347
GOL.27: 9 residues within 4Å:- Chain A: V.602, T.604
- Chain B: W.347, N.366, Y.389, D.391, T.393, E.395, K.608
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:N.366, B:K.608, A:V.602
- Water bridges: B:W.347, B:D.391
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Langley, D.B. et al., Enantiomer-specific binding of ruthenium(II) molecular wires by the amine oxidase of Arthrobacter globiformis. J. Am. Chem. Soc. (2008)
- Release Date
- 2007-05-01
- Peptides
- PHENYLETHYLAMINE OXIDASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CU: COPPER (II) ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x R5A: RUTHENIUM WIRE, 5 CARBON LINKER(Non-covalent)
- 2 x R5B: RUTHENIUM WIRE WC5(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 14 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Langley, D.B. et al., Enantiomer-specific binding of ruthenium(II) molecular wires by the amine oxidase of Arthrobacter globiformis. J. Am. Chem. Soc. (2008)
- Release Date
- 2007-05-01
- Peptides
- PHENYLETHYLAMINE OXIDASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A