SMTL ID : 2cg0.1

AGAO in complex with wc9a (Ru-wire inhibitor, 9-carbon linker, data set a)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 3 residues within 4Å: Chain A: H.429, H.431, H.590 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.429, A:H.431, A:H.590, H2O.8, H2O.8 CU.11: 3 residues within 4Å: Chain B: H.429, H.431, H.590 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.429, B:H.431, B:H.590, H2O.20, H2O.20

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 7 residues within 4Å: Chain A: R.47, D.438, M.439, F.444, D.579, I.580, V.581 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.580, A:I.580 NA.12: 7 residues within 4Å: Chain B: R.47, D.438, M.439, F.444, D.579, I.580, V.581 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:M.439, B:D.579, B:I.580

2 x R9A: RUTHENIUM WIRE, 9 CARBON LINKER(Non-covalent)

R9A.3: 22 residues within 4Å: Chain A: E.100, F.103, A.133, P.134, L.135, S.136, W.166, Y.294, D.296, Y.300, Y.305, T.376, I.377, G.378, N.379, Y.380, F.405 Chain B: D.355, L.356, W.357, G.359, N.361 5 PLIP interactions: 5 interactions with chain A, Hydrophobic interactions: A:F.103, A:A.133, A:L.135, A:W.166, A:Y.305 R9A.13: 22 residues within 4Å: Chain A: D.355, L.356, W.357, G.359, N.361 Chain B: E.100, F.103, A.133, P.134, L.135, S.136, W.166, Y.294, D.296, Y.300, Y.305, T.376, I.377, G.378, N.379, Y.380, F.405 5 PLIP interactions: 5 interactions with chain B, Hydrophobic interactions: B:F.103, B:A.133, B:L.135, B:W.166, B:Y.305

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 8 residues within 4Å: Chain A: G.348, I.349, R.365 Chain B: D.314, C.315, L.316, H.343, Y.385 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:L.316, A:I.349 Water bridges: B:Y.385, B:K.399 Salt bridges: B:H.343, B:K.399, A:R.365 SO4.14: 8 residues within 4Å: Chain A: D.314, C.315, L.316, H.343, Y.385 Chain B: G.348, I.349, R.365 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:L.316, B:I.349 Water bridges: A:Y.385, A:K.399 Salt bridges: A:H.343, A:K.399, B:R.365

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 15 residues within 4Å: Chain A: R.530, R.531, A.533, P.551, T.552, G.553, F.555, V.556, H.559, S.560, G.561, G.562, A.563, G.564, P.566 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.531, A:T.552, A:S.560, A:A.563 Water bridges: A:A.533, A:F.555 GOL.6: 7 residues within 4Å: Chain A: L.125, V.157, D.159, H.168, V.195, P.196, A.197 No protein-ligand interaction detected (PLIP) GOL.7: 6 residues within 4Å: Chain A: Q.517, L.588, D.603 Chain B: H.513, K.608, R.610 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.603, B:K.608, B:K.608 Water bridges: A:Q.517 GOL.8: 6 residues within 4Å: Chain A: D.442, G.443, F.444, T.445, N.497, E.499 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.444, A:T.445, A:T.445, A:T.445, A:N.497 GOL.9: 10 residues within 4Å: Chain A: K.240, R.617, S.618, P.619, V.620, L.621, D.622 Chain B: L.207, T.208, R.212 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.240, A:S.618, A:L.621, A:D.622 Water bridges: A:D.262 GOL.10: 8 residues within 4Å: Chain A: W.347, N.366, Y.389, D.391, T.393, E.395, K.608, R.610 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.366, A:K.608 Water bridges: A:W.347, A:D.391 GOL.15: 15 residues within 4Å: Chain B: R.530, R.531, A.533, P.551, T.552, G.553, F.555, V.556, H.559, S.560, G.561, G.562, A.563, G.564, P.566 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.531, B:T.552, B:S.560, B:A.563 Water bridges: B:A.533, B:F.555 GOL.16: 7 residues within 4Å: Chain B: L.125, V.157, D.159, H.168, V.195, P.196, A.197 No protein-ligand interaction detected (PLIP) GOL.17: 6 residues within 4Å: Chain A: H.513, K.608, R.610 Chain B: Q.517, L.588, D.603 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.603, A:K.608 Water bridges: B:Q.517 GOL.18: 6 residues within 4Å: Chain B: D.442, G.443, F.444, T.445, N.497, E.499 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:F.444, B:T.445, B:T.445, B:N.497 GOL.19: 10 residues within 4Å: Chain A: L.207, T.208, R.212 Chain B: K.240, R.617, S.618, P.619, V.620, L.621, D.622 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.618, B:L.621, B:D.622 Water bridges: B:D.262 GOL.20: 8 residues within 4Å: Chain B: W.347, N.366, Y.389, D.391, T.393, E.395, K.608, R.610 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.366, B:K.608 Water bridges: B:W.347, B:D.391

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Langley, D.B. et al., Enantiomer-Specific Binding of Ruthenium(II) Molecular Wires by the Amine Oxidase of Arthrobacter Globiformis. J.Am.Chem.Soc. (2008)

Release Date

2007-05-01

Peptides

PHENYLETHYLAMINE OXIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PHENYLETHYLAMINE OXIDASE

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