SMTL ID : 2chh.1

RALSTONIA SOLANACEARUM HIGH-AFFINITY MANNOSE-BINDING LECTIN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.00 Å

Oligo State

homo-tetramer

Ligands

8 x CA: CALCIUM ION(Non-covalent)

CA.1: 8 residues within 4Å: Chain A: N.22, D.101, N.103, D.104 Chain C: G.114 Ligands: CA.2, MAN.4, BMA.5 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C Metal complexes: A:N.22, A:D.101, A:D.104, C:G.114 CA.2: 7 residues within 4Å: Chain A: E.95, D.99, D.101, D.104 Ligands: CA.1, MAN.4, BMA.5 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.95, A:E.95, A:D.99, A:D.101, A:D.104 CA.6: 8 residues within 4Å: Chain B: N.22, D.101, N.103, D.104 Chain D: G.114 Ligands: CA.7, MAN.9, BMA.10 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain D Metal complexes: B:N.22, B:D.101, B:D.104, D:G.114 CA.7: 7 residues within 4Å: Chain B: E.95, D.99, D.101, D.104 Ligands: CA.6, MAN.9, BMA.10 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.95, B:E.95, B:D.99, B:D.101, B:D.104 CA.11: 8 residues within 4Å: Chain A: G.114 Chain C: N.22, D.101, N.103, D.104 Ligands: CA.12, MAN.14, BMA.15 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A Metal complexes: C:N.22, C:D.101, C:D.104, A:G.114 CA.12: 7 residues within 4Å: Chain C: E.95, D.99, D.101, D.104 Ligands: CA.11, MAN.14, BMA.15 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.95, C:E.95, C:D.99, C:D.101, C:D.104 CA.16: 8 residues within 4Å: Chain B: G.114 Chain D: N.22, D.101, N.103, D.104 Ligands: CA.17, MAN.19, BMA.20 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain B Metal complexes: D:N.22, D:D.101, D:D.104, B:G.114 CA.17: 7 residues within 4Å: Chain D: E.95, D.99, D.101, D.104 Ligands: CA.16, MAN.19, BMA.20 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:E.95, D:E.95, D:D.99, D:D.101, D:D.104

4 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 6 residues within 4Å: Chain A: F.89, M.91, V.108 Chain C: F.89, M.91 Ligands: UNX.13 No protein-ligand interaction detected (PLIP) UNX.8: 6 residues within 4Å: Chain B: F.89, M.91, V.108 Chain D: F.89, M.91 Ligands: UNX.18 No protein-ligand interaction detected (PLIP) UNX.13: 6 residues within 4Å: Chain A: F.89, M.91 Chain C: F.89, M.91, V.108 Ligands: UNX.3 No protein-ligand interaction detected (PLIP) UNX.18: 6 residues within 4Å: Chain B: F.89, M.91 Chain D: F.89, M.91, V.108 Ligands: UNX.8 No protein-ligand interaction detected (PLIP)

4 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.4: 13 residues within 4Å: Chain A: N.22, A.23, A.24, N.25, E.95, D.96, D.99, D.101, D.104 Chain C: G.114 Ligands: CA.1, CA.2, BMA.5 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:A.24, A:N.25, A:D.99, A:D.104, C:G.114 MAN.9: 13 residues within 4Å: Chain B: N.22, A.23, A.24, N.25, E.95, D.96, D.99, D.101, D.104 Chain D: G.114 Ligands: CA.6, CA.7, BMA.10 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:A.24, B:N.25, B:D.99, B:D.104, D:G.114 MAN.14: 13 residues within 4Å: Chain A: G.114 Chain C: N.22, A.23, A.24, N.25, E.95, D.96, D.99, D.101, D.104 Ligands: CA.11, CA.12, BMA.15 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:A.24, C:N.25, C:D.99, C:D.104, A:G.114 MAN.19: 13 residues within 4Å: Chain B: G.114 Chain D: N.22, A.23, A.24, N.25, E.95, D.96, D.99, D.101, D.104 Ligands: CA.16, CA.17, BMA.20 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain D Hydrogen bonds: B:G.114, D:A.24, D:N.25, D:D.99, D:D.104

4 x BMA: beta-D-mannopyranose(Non-covalent)

BMA.5: 14 residues within 4Å: Chain A: N.22, A.23, A.24, N.25, T.46, E.95, D.96, D.99, D.101, D.104 Chain C: G.114 Ligands: CA.1, CA.2, MAN.4 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:A.24, A:N.25, A:D.99, A:D.104, C:G.114, C:G.114 Water bridges: C:G.114 BMA.10: 14 residues within 4Å: Chain B: N.22, A.23, A.24, N.25, T.46, E.95, D.96, D.99, D.101, D.104 Chain D: G.114 Ligands: CA.6, CA.7, MAN.9 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain D Hydrogen bonds: B:A.24, B:N.25, B:D.99, B:D.104, D:G.114, D:G.114 BMA.15: 14 residues within 4Å: Chain A: G.114 Chain C: N.22, A.23, A.24, N.25, T.46, E.95, D.96, D.99, D.101, D.104 Ligands: CA.11, CA.12, MAN.14 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:A.24, C:N.25, C:D.99, C:D.104, A:G.114, A:G.114 BMA.20: 14 residues within 4Å: Chain B: G.114 Chain D: N.22, A.23, A.24, N.25, T.46, E.95, D.96, D.99, D.101, D.104 Ligands: CA.16, CA.17, MAN.19 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain D Hydrogen bonds: B:G.114, B:G.114, D:A.24, D:N.25, D:D.99, D:D.104 Water bridges: B:G.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sudakevitz, D. et al., A new Ralstonia solanacearum high-affinity mannose-binding lectin RS-IIL structurally resembling the Pseudomonas aeruginosa fucose-specific lectin PA-IIL. Mol. Microbiol. (2004)

Release Date

2006-03-16

Peptides

PROTEIN RSC3288: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

PROTEIN RSC3288